A data mining analysis of COVID-19 cases in states of United States of America

Epidemic diseases can be extremely dangerous with its hazarding influences. They may have negative effects on economies, businesses, environment, humans, and workforce. In this paper, some of the factors that are interrelated with COVID-19 pandemic have been examined using data mining methodologies and approaches. As a result of the analysis some rules and insights have been discovered and performances of the data mining algorithms have been evaluated. According to the analysis results, JRip algorithmic technique had the most correct classification rate and the lowest root mean squared error (RMSE). Considering classification rate and RMSE measure, JRip can be considered as an effective method in understanding factors that are related with corona virus caused deaths.

Forest yield prediction under different climate change scenarios using data intelligent models in Pakistan

This study aimed to develop and evaluate data driven models for prediction of forest yield under different climate change scenarios in the Gallies forest division of district Abbottabad, Pakistan. The Random Forest (RF) and Kernel Ridge Regression (KRR) models were developed and evaluated using yield data of two species (Blue pine and Silver fir) as an objective variable and climate data (temperature, humidity, rainfall and wind speed) as predictive variables. Prediction accuracy of both the models were assessed by means of root mean squared error (RMSE), mean absolute error (MAE), correlation coefficient (r), relative root mean squared error (RRMSE), Legates-McCabe’s (LM), Willmott’s index (WI) and Nash-Sutcliffe (NSE) metrics. Overall, the RF model outperformed the KRR model due to its higher accuracy in forecasting of forest yield. The study strongly recommends that RF model should be applied in other regions of the country for prediction of forest growth and yield, which may help in the management and future planning of forest productivity in Pakistan.

Simulated Annealing-Based Image Reconstruction for Patients With COVID-19 as a Model for Ultralow-Dose Computed Tomography

The proposed algorithm of inverse problem of computed tomography (CT), using limited views, is based on stochastic techniques, namely simulated annealing (SA). The selection of an optimal cost function for SA-based image reconstruction is of prime importance. It can reduce annealing time, and also X-ray dose rate accompanying better image quality. In this paper, effectiveness of various cost functions, namely universal image quality index (UIQI), root-mean-squared error (RMSE), structural similarity index measure (SSIM), mean absolute error (MAE), relative squared error (RSE), relative absolute error (RAE), and root-mean-squared logarithmic error (RMSLE), has been critically analyzed and evaluated for ultralow-dose X-ray CT of patients with COVID-19. For sensitivity analysis of this ill-posed problem, the stochastically estimated images of lung phantom have been reconstructed. The cost function analysis in terms of computational and spatial complexity has been performed using image quality measures, namely peak signal-to-noise ratio (PSNR), Euclidean error (EuE), and weighted peak signal-to-noise ratio (WPSNR). It has been generalized for cost functions that RMSLE exhibits WPSNR of 64.33 ± 3.98 dB and 63.41 ± 2.88 dB for 8 × 8 and 16 × 16 lung phantoms, respectively, and it has been applied for actual CT-based image reconstruction of patients with COVID-19. We successfully reconstructed chest CT images of patients with COVID-19 using RMSLE with eighteen projections, a 10-fold reduction in radiation dose exposure. This approach will be suitable for accurate diagnosis of patients with COVID-19 having less immunity and sensitive to radiation dose.

Imputation by feature importance (IBFI): A methodology to envelop machine learning method for imputing missing patterns in time series data

A new methodology, imputation by feature importance (IBFI), is studied that can be applied to any machine learning method to efficiently fill in any missing or irregularly sampled data. It applies to data missing completely at random (MCAR), missing not at random (MNAR), and missing at random (MAR). IBFI utilizes the feature importance and iteratively imputes missing values using any base learning algorithm. For this work, IBFI is tested on soil radon gas concentration (SRGC) data. XGBoost is used as the learning algorithm and missing data are simulated using R for different missingness scenarios. IBFI is based on the physically meaningful assumption that SRGC depends upon environmental parameters such as temperature and relative humidity. This assumption leads to a model obtained from the complete multivariate series where the controls are available by taking the attribute of interest as a response variable. IBFI is tested against other frequently used imputation methods, namely mean, median, mode, predictive mean matching (PMM), and hot-deck procedures. The performance of the different imputation methods was assessed using root mean squared error (RMSE), mean squared log error (MSLE), mean absolute percentage error (MAPE), percent bias (PB), and mean squared error (MSE) statistics. The imputation process requires more attention when multiple variables are missing in different samples, resulting in challenges to machine learning methods because some controls are missing. IBFI appears to have an advantage in such circumstances. For testing IBFI, Radon Time Series Data (RTS) has been used and data was collected from 1st March 2017 to the 11th of May 2018, including 4 seismic activities that have taken place during the data collection time.

Age Estimation from fMRI Data Using Recurrent Neural Network

Finding a biomarker that indicates the subject’s age is one of the most important topics in biology. Several recent studies tried to extract a biomarker from brain imaging data including fMRI data. However, most of them focused on MRI data, which do not provide dynamics and lack attempts to apply recently proposed deep learning models. We propose a deep neural network model that estimates the age of a subject from fMRI images using a recurrent neural network (RNN), more precisely, a gated recurrent unit (GRU). However, applying neural networks is not trivial due to the high dimensional nature of fMRI data. In this work, we propose a novel preprocessing technique using the Automated Anatomical Labeling (AAL) atlas, which significantly reduces the input dimension. The proposed dimension reduction technique allows us to train our model with 640 training and validation samples from different projects under mean squared error (MSE). Finally, we obtain the correlation value of 0.905 between the predicted age and the actual age on 155 test samples. The proposed model estimates the age within the range of ±12 on most of the test samples. Our model is written in Python and is freely available for download.

The Tracking and Frequency Measurement of the Sway of Leafless Deciduous Trees by Adaptive Tracking Window Based on MOSSE

The tree sway frequency is an important part of the dynamic properties of trees. In order to obtain trees sway frequency in wind, a method of tracking and measuring the sway frequency of leafless deciduous trees by adaptive tracking window based on MOSSE was proposed. Firstly, an adaptive tracking window is constructed for the observed target. Secondly, the tracking method based on Minimum Output Sum Of Squared Error Filter (MOSSE) is used to track tree sway. Thirdly, Fast Fourier transform was used to analyze the horizontal sway velocity of the target area on the trees, and the sway frequency was determined. Finally, comparing the power spectral densities (PSDs) of the x axis acceleration measured by the accelerometer and PSDs of the x axis velocity measured by the video, the fundamental sway frequency measured by the accelerometer is equal to the fundamental sway frequency measured by video. The results show that the video-based method can be used successfully for measuring the sway frequency of leafless deciduous trees.

Radar Echo Spatiotemporal Sequence Prediction Using an Improved ConvGRU Deep Learning Model

Precipitation nowcasting is extremely important in disaster prevention and mitigation, and can improve the quality of meteorological forecasts. In recent years, deep learning-based spatiotemporal sequence prediction models have been widely used in precipitation nowcasting, obtaining better prediction results than numerical weather prediction models and traditional radar echo extrapolation results. Because existing deep learning models rarely consider the inherent interactions between the model input data and the previous output, model prediction results do not sufficiently meet the actual forecast requirement. We propose a Modified Convolutional Gated Recurrent Unit (M-ConvGRU) model that performs convolution operations on the input data and previous output of a GRU network. Moreover, this adopts an encoder–forecaster structure to better capture the characteristics of spatiotemporal correlation in radar echo maps. The results of multiple experiments demonstrate the effectiveness of the proposed model. The balanced mean absolute error (B-MAE) and balanced mean squared error (B-MSE) of M-ConvGRU are slightly lower than Convolutional Long Short-Term Memory (ConvLSTM), but the mean absolute error (MAE) and mean squared error (MSE) of M-ConvGRU are 6.29% and 10.25% lower than ConvLSTM, and the prediction accuracy and prediction performance for strong echo regions were also improved.

A Novel Image Processing Methodology for X-ray Image Compression and Enhancement

Currently, there a growing demand of data produced and stored in clinical domains. Therefore, for effective dealings of massive sets of data, a fusion methodology needs to be analyzed by considering the algorithmic complexities. For effective minimization of the severance of image content, hence minimizing the capacity to store and communicate data in optimal forms, image processing methodology has to be involved. In that case, in this research, two compression methodologies: lossy compression and lossless compression were utilized for the purpose of compressing images, which maintains the quality of images. Also, a number of sophisticated approaches to enhance the quality of the fused images have been applied. The methodologies have been assessed and various fusion findings have been presented. Lastly, performance parameters were obtained and evaluated with respect to sophisticated approaches. Structure Similarity Index Metric (SSIM), Mean Squared Error (MSE), Peak Signal-to-Noise Ratio (PSNR) are the metrics, which were utilized for the sample clinical pictures. Critical analysis of the measurement parameters shows higher efficiency compared to numerous image processing methods. This research draws understanding to these approaches and enables scientists to choose effective methodologies of a particular application.

A Neuro-Evolution Heuristic Using Active-Set Techniques to Solve a Novel Nonlinear Singular Prediction Differential Model

In this study, a novel design of a second kind of nonlinear Lane–Emden prediction differential singular model (NLE-PDSM) is presented. The numerical solutions of this model were investigated via a neuro-evolution computing intelligent solver using artificial neural networks (ANNs) optimized by global and local search genetic algorithms (GAs) and the active-set method (ASM), i.e., ANN-GAASM. The novel NLE-PDSM was derived from the standard LE and the PDSM along with the details of singular points, prediction terms and shape factors. The modeling strength of ANN was implemented to create a merit function based on the second kind of NLE-PDSM using the mean squared error, and optimization was performed through the GAASM. The corroboration, validation and excellence of the ANN-GAASM for three distinct problems were established through relative studies from exact solutions on the basis of stability, convergence and robustness. Furthermore, explanations through statistical investigations confirmed the worth of the proposed scheme.