scholarly journals Crystal structure interconnections in a family of hydrated phosphate-sulfates

2014 ◽  
Vol 70 (a1) ◽  
pp. C1091-C1091
Author(s):  
Olga Yakubovich ◽  
Ian Steele ◽  
Oxana Karimova
Keyword(s):  
Crystal Structure ◽  
Hydrogen Bonding ◽  
Unit Cell ◽  
Crystal Chemical ◽  
Synchrotron Diffraction ◽  
Unit Cell Parameters ◽  
Cell Parameters ◽  
Triclinic Structure ◽  
Hydrated Phosphate ◽  
Fibrous Mineral

The phosphate-sulfate family incorporates several water-containing hypergene minerals with various structures. We determined the crystal structure of lately discovered [1] fibrous mineral arangasite, [Al2F(H2O)6(PO4)(SO4)]·3(H2O) using single-crystal synchrotron diffraction at 100 K (a =7.073(1), b=9.634(2), c=10.827(2) Å, β=79.60(1)0, P2/a, Z=2). Its crystal chemical interpretation has allowed us to reveal some interesting features in a title group of compounds. The arangasite crystal structure is dominated by chains extending in the [100] direction and built of pairs of corner-shared Al octahedra joined through bridging F atoms and P tetrahedra. They alternate in the [001] with S tetrahedra forming layers parallel to the ac plane through a system of hydrogen bonds. Along [010] the complex layers are separated by layers of H2O molecules. Hydrogen bonding serves here as the only mechanism providing linkage between the main structural fragments. The Al/ P chains are topologically identical to the chains built from Fe octahedra and P tetrahedra in the triclinic structure of destinezite, Fe2(OH)(PO4)(SO4)(H2O)6[2]. The repeating subunit of both chains consists of two octahedra and one tetrahedron sharing vertices. A main difference among the chains arises from their chemistry; Al octahedra in arangasite form pairs by sharing the F vertex of neighboring polyhedra, whereas pairs of Fe octahedra in destinezite are linked together through the oxygen vertex of an OH group. As a result, the larger size of the Fe octahedra compared to Al octahedra causes a larger c = 7.31 Å along the chain in destinezite. Additional SO4tetrahedra here are attached to these chains along their periphery through an oxygen vertex bridge with Fe octahedra. The monoclinic sanjuanite, Al2(PO4)(SO4)(OH)(H2O)9structure [3] is composed of Al/P chains, parallel to a = 6.11 Å. These chains are also built from three-member units that include corner-sharing pairs of octahedra connected by PO4tetrahedron, but they are not topologically equivalent to the chains in the arangasite and destinezite structures. Similar to arangasite, sulfate groups and H2O molecules reside between chains in the sanjuanite structure with hydrogen bonding. Thus, similar the crystal chemical formulae of sanjuanite and arangasite differ with respect to the (OH) → F substitution, which results in contrasting unit cell parameters. Note, that the unit cell volume of sanjuanite, is twice as large as arangasite.

scholarly journals The crystal structure of cyanotrichite

2015 ◽  
Vol 79 (2) ◽  
pp. 321-335 ◽  
Author(s):  
Stuart J. Mills ◽  
Andrew G. Christy ◽  
Fernando Colombo ◽  
Jason R. Price
Keyword(s):  
Crystal Structure ◽  
Hydrogen Bonding ◽  
Local Structure ◽  
Unit Cell ◽  
Group Symmetry ◽  
Hydrogen Atoms ◽  
Unit Cell Parameters ◽  
Space Group ◽  
Cell Parameters ◽  
Bonding Scheme

AbstractWe report the single-crystal average structure of cyanotrichite, Cu4Al2[SO4](OH)12(H2O)2, from the Maid of Sunshine mine, Arizona, USA. Cyanotrichite crystallizes in space group C2/m, with the unit-cell parameters a = 12.625(3), b = 2.8950(6), c = 10.153(2) Å and β = 92.17(3)o. All non-hydrogen atoms were located and refined to R1 = 0.0394 for all 584 observed reflections [Fo > 4σFo] and 0.0424 for all 622 unique reflections. The cyanotrichite structure consists of a principal building unit of a three-wide [Cu2Al(OH)6] ribbon of edge-sharing Cu and Al polyhedra || b, similar to that found for camerolaite. The ribbons lie in layers || (001) and between these layers, while SO4 tetrahedra and H2O molecules form rods running || b. A hydrogen-bonding scheme is also proposed.A sample of cyanotrichite from the Cap Garonne mine, Le Pradet, France, showed a 4b superstructure with the following unit cell: space group P2/m, a = 12.611(2) Å, b = 11.584(16) = 4 × 2.896(4) Å, c = 10.190(1) Å and β = 92.29(6)o. The supercell could not be refined in detail, but nevertheless imposes constraints on the local structure in that while the space-group symmetry prevents full order of SO4 and H2O in the 4b supercell, it requires that the sequence of species along any given rod is [-SO4-SO4-(H2O)2-(H2O)2-] rather than [-SO4-(H2O)2-SO4-(H2O)2-].

scholarly journals Crystal Structure Refinements of Four Monazite Samples from Different Localities

Minerals ◽  
2020 ◽  
Vol 10 (11) ◽  
pp. 1028 ◽  
Author(s):  
M. Mashrur Zaman ◽  
Sytle M. Antao
Keyword(s):  
Crystal Structure ◽  
Electron Probe ◽  
Unit Cell Volume ◽  
Unit Cell ◽  
X Ray Diffraction ◽  
Unit Cell Parameters ◽  
X Ray ◽  
Cell Parameters ◽  
Large Unit Cell ◽  
A Site

This study investigates the crystal chemistry of monazite (APO4, where A = Lanthanides = Ln, as well as Y, Th, U, Ca, and Pb) based on four samples from different localities using single-crystal X-ray diffraction and electron-probe microanalysis. The crystal structure of all four samples are well refined, as indicated by their refinement statistics. Relatively large unit-cell parameters (a = 6.7640(5), b = 6.9850(4), c = 6.4500(3) Å, β = 103.584(2)°, and V = 296.22(3) Å3) are obtained for a detrital monazite-Ce from Cox’s Bazar, Bangladesh. Sm-rich monazite from Gunnison County, Colorado, USA, has smaller unit-cell parameters (a = 6.7010(4), b = 6.9080(4), c = 6.4300(4) Å, β = 103.817(3)°, and V = 289.04(3) Å3). The a, b, and c unit-cell parameters vary linearly with the unit-cell volume, V. The change in the a parameter is large (0.2 Å) and is related to the type of cations occupying the A site. The average <A-O> distances vary linearly with V, whereas the average <P-O> distances are nearly constant because the PO4 group is a rigid tetrahedron.

scholarly journals The crystal structure of alstonite, BaCa(CO3)2: an extraordinary example of ‘hidden’ complex twinning in large single crystals

2020 ◽  
Vol 84 (5) ◽  
pp. 699-704
Author(s):  
Luca Bindi ◽  
Andrew C. Roberts ◽  
Cristian Biagioni
Keyword(s):  
Crystal Structure ◽  
Single Crystals ◽  
Structure Determination ◽  
Unit Cell ◽  
Crystal Structure Determination ◽  
Unit Cell Parameters ◽  
Space Group ◽  
Cell Parameters ◽  
Structure Determinations

AbstractAlstonite, BaCa(CO3)2, is a mineral described almost two centuries ago. It is widespread in Nature and forms magnificent cm-sized crystals. Notwithstanding, its crystal structure was still unknown. Here, we report the crystal-structure determination of the mineral and discuss it in relationship to other polymorphs of BaCa(CO3)2. Alstonite is trigonal, space group P31m, with unit-cell parameters a = 17.4360(6), c = 6.1295(2) Å, V = 1613.80(9) Å3 and Z = 12. The crystal structure was solved and refined to R1 = 0.0727 on the basis of 4515 reflections with Fo > 4σ(Fo) and 195 refined parameters. Alstonite is formed by the alternation, along c, of Ba-dominant and Ca-dominant layers, separated by CO3 groups parallel to {0001}. The main take-home message is to show that not all structure determinations of minerals/compounds can be solved routinely. Some crystals, even large ones displaying excellent diffraction quality, can be twinned in complex ways, thus making their study a crystallographic challenge.

scholarly journals Crystal Chemistry and High-Temperature Behaviour of Ammonium Phases NH4MgCl3·6H2O and (NH4)2Fe3+Cl5·H2O from the Burned Dumps of the Chelyabinsk Coal Basin

Minerals ◽  
2019 ◽  
Vol 9 (8) ◽  
pp. 486 ◽  
Author(s):  
Andrey A. Zolotarev ◽  
Elena S. Zhitova ◽  
Maria G. Krzhizhanovskaya ◽  
Mikhail A. Rassomakhin ◽  
Vladimir V. Shilovskikh ◽  
...  
Keyword(s):  
Crystal Structure ◽  
High Temperature ◽  
Unit Cell ◽  
X Ray Diffraction ◽  
Coal Basin ◽  
Unit Cell Parameters ◽  
Space Group ◽  
X Ray ◽  
Cell Parameters ◽  
Mineral Phases

The technogenic mineral phases NH4MgCl3·6H2O and (NH4)2Fe3+Cl5·H2O from the burned dumps of the Chelyabinsk coal basin have been investigated by single-crystal X-ray diffraction, scanning electron microscopy and high-temperature powder X-ray diffraction. The NH4MgCl3·6H2O phase is monoclinic, space group C2/c, unit cell parameters a = 9.3091(9), b = 9.5353(7), c = 13.2941(12) Å, β = 90.089(8)° and V = 1180.05(18) Å3. The crystal structure of NH4MgCl3·6H2O was refined to R1 = 0.078 (wR2 = 0.185) on the basis of 1678 unique reflections. The (NH4)2Fe3+Cl5·H2O phase is orthorhombic, space group Pnma, unit cell parameters a = 13.725(2), b = 9.9365(16), c = 7.0370(11) Å and V = 959.7(3) Å3. The crystal structure of (NH4)2Fe3+Cl5·H2O was refined to R1 = 0.023 (wR2 = 0.066) on the basis of 2256 unique reflections. NH4MgCl3·6H2O is stable up to 90 °C and then transforms to the less hydrated phase isotypic to β-Rb(MnCl3)(H2O)2 (i.e., NH4MgCl3·2H2O), the latter phase being stable up to 150 °C. (NH4)2Fe3+Cl5·H2O is stable up to 120 °C and then transforms to an X-ray amorphous phase. Hydrogen bonds provide an important linkage between the main structural units and play the key role in determining structural stability and physical properties of the studied phases. The mineral phases NH4MgCl3·6H2O and (NH4)2Fe3+Cl5·H2O are isostructural with natural minerals novograblenovite and kremersite, respectively.

scholarly journals Structural characterization of a novel monotreme-specific protein with antimicrobial activity from the milk of the platypus

2018 ◽  
Vol 74 (1) ◽  
pp. 39-45 ◽  
Author(s):  
Janet Newman ◽  
Julie A. Sharp ◽  
Ashwantha Kumar Enjapoori ◽  
John Bentley ◽  
Kevin R. Nicholas ◽  
...  
Keyword(s):  
Crystal Structure ◽  
Antimicrobial Activity ◽  
Mammalian Cells ◽  
Unit Cell ◽  
Protein Crystal ◽  
Unit Cell Parameters ◽  
Flag Epitope ◽  
Data Set ◽  
Space Group ◽  
Cell Parameters

Monotreme lactation protein (MLP) is a recently identified protein with antimicrobial activity. It is present in the milk of monotremes and is unique to this lineage. To characterize MLP and to gain insight into the potential role of this protein in the evolution of lactation, the crystal structure of duck-billed platypus (Ornithorhynchus anatinus) MLP was determined at 1.82 Å resolution. This is the first structure to be reported for this novel, mammalian antibacterial protein. MLP was expressed as a FLAG epitope-tagged protein in mammalian cells and crystallized readily, with at least three space groups being observed (P1,C2 andP21). A 1.82 Å resolution native data set was collected from a crystal in space groupP1, with unit-cell parametersa= 51.2,b= 59.7,c= 63.1 Å, α = 80.15, β = 82.98, γ = 89.27°. The structure was solved by SAD phasing using a protein crystal derivatized with mercury in space groupC2, with unit-cell parametersa= 92.7,b = 73.2,c= 56.5 Å, β = 90.28°. MLP comprises a monomer of 12 helices and two short β-strands, with much of the N-terminus composed of loop regions. The crystal structure of MLP reveals no three-dimensional similarity to any known structures and reveals a heretofore unseen fold, supporting the idea that monotremes may be a rich source for the identification of novel proteins. It is hypothesized that MLP in monotreme milk has evolved to specifically support the unusual lactation strategy of this lineage and may have played a central role in the evolution of these mammals.

Crystal structure of three diaza-crowns-18

1997 ◽  
Vol 212 (5) ◽  
Author(s):  
P. Dokurno ◽  
R. Trokowski ◽  
B. Kościuszko-Panek ◽  
T. Ossowski ◽  
A. Konitz ◽  
...  
Keyword(s):  
Crystal Structure ◽  
Crystal Structures ◽  
Unit Cell ◽  
Unit Cell Parameters ◽  
Space Groups ◽  
Cell Parameters

AbstractThe crystal structures of three diaza crowns-18, namely 1,4,10,13-tetraoxa-7,16-diazacyclooctadecane (crown 1), 1,4,10,13-tetraoxa-7,16-diazacyclooctadecane-7,16-diacetonitrile (crown 2) and N,N′-(1,4,10,13-tetraoxa-7,16-diazacyclooctadecane-7,16-diyldi-2,1-ethanediyl)bis-[4-methyl-benzenesulfonamide] (crown 3) have the following space groups and unit cell parameters: crown 1(C

Crystal structure of Ca2Zn2(V4O14) and Pb2Cd2(V3O10)(VO4) double vanadates

2018 ◽  
Vol 33 (3) ◽  
pp. 216-224 ◽  
Author(s):  
V. D. Zhuravlev ◽  
A. P. Tyutyunnik ◽  
A. Y. Chufarov ◽  
N. I. Lobachevskaya ◽  
A. A. Velikodnyi
Keyword(s):  
Crystal Structure ◽  
Unit Cell ◽  
Powder Diffraction Data ◽  
Structural Refinement ◽  
Unit Cell Parameters ◽  
Monoclinic Symmetry ◽  
Conventional Solid State Reaction ◽  
Space Group ◽  
X Ray ◽  
Cell Parameters

Polycrystalline samples of Ca2Zn2(V4O14) (I) and Pb2Cd2(V3O10)(VO4) (II) were synthesized using the nitrate–citrate method (I) and conventional solid state reaction (II). The structural refinement based on X-ray powder diffraction data showed that the crystal structure of (I) is characterized by monoclinic symmetry with unit-cell parameters a = 6.8044(1) Å, b = 14.4876(3) Å, c = 11.2367(2) Å, β = 99.647(1)° [space group P21/c (No. 14), Z = 4], and the crystal structure of (II) is triclinic with unit-cell parameters a = 7.03813(6) Å, b = 12.9085(1) Å, c = 6.99961(5) Å, α = 90.7265(5)°, β = 96.3789(5)°, γ = 94.9530(6)°, V = 629.470(8) Å3 [space group P$\bar 1$ (No. 2), Z = 2].

Tetra-n-butylammonium iodide: a space-group revision

2007 ◽  
Vol 63 (3) ◽  
pp. o1464-o1466 ◽  
Author(s):  
Wiesław Prukała ◽  
Bogdan Marciniec ◽  
Maciej Kubicki
Keyword(s):  
Crystal Structure ◽  
Room Temperature ◽  
Unit Cell ◽  
Unit Cell Parameters ◽  
Space Group ◽  
Cell Parameters ◽  
Temperature Determination

The crystal structure of tetra-n-butylammonium iodide, C16H36N+·I−, has been redetermined at room temperature and at 100 (1) K. In the low-quality (R = 0.142) room-temperature determination by Wang, Habenschuss, Xenopoulos & Wunderlich [Mol. Cryst. Liq. Cryst. Sci. Technol. Sect. A (1995), 264, 115–129], this structure was described as crystallizing in the space group C2 with Z′ = 2. Our results prove that the correct space group is C2/c (with the same unit-cell parameters as in the original determination) at both temperatures. In the crystal structure, the iodide anions fill the voids in the grid-like cationic structure. Weak C—H...I interactions (eight per anion) strengthen this packing.

The crystal structure of trisodium hexachlororhodate (Na3RhCl6)

2018 ◽  
Vol 33 (1) ◽  
pp. 62-65
Author(s):  
Martin Etter
Keyword(s):  
Crystal Structure ◽  
Powder Diffraction ◽  
Structure Type ◽  
Unit Cell ◽  
Unit Cell Parameters ◽  
Space Group ◽  
X Ray ◽  
Cell Parameters

Commercially available trisodium hexachlororhodate (Na3RhCl6) was dehydrated and characterized by laboratory X-ray powder diffraction. The crystal structure is isostructural to the Na3CrCl6 structure type with space group P$\bar 31$c. Unit-cell parameters are a = 6.8116(1) Å, c = 11.9196(2) Å, V = 478.95(2) Å3, and Z = 2.

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