A high-throughput analysis pipeline for large next generation DNA sequencing studies

2012 IEEE International Conference on Bioinformatics and Biomedicine ◽

10.1109/bibm.2012.6392638 ◽

2012 ◽

Author(s):

Zayed Albertyn ◽

Jorg Hakenberg ◽

Hongjin Bian ◽

Huifeng Niu ◽

James Cai

Keyword(s):

Dna Sequencing ◽

High Throughput ◽

Next Generation ◽

Analysis Pipeline ◽

High Throughput Analysis ◽

Throughput Analysis ◽

Next Generation Dna Sequencing ◽

Sequencing Studies

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Novel Next-Generation DNA Sequencing Techniques for Ultra High-Throughput Applications in Bio-Medicine

Molecular Diagnostics ◽

10.1016/b978-0-12-374537-8.00024-9 ◽

2010 ◽

pp. 365-378

Author(s):

Wilhelm J. Ansorge

Keyword(s):

Dna Sequencing ◽

High Throughput ◽

Next Generation ◽

Next Generation Dna Sequencing

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Abstract 3967: The Cancer Genome Project high throughput analysis pipeline

10.1158/1538-7445.am2012-3967 ◽

2012 ◽

Author(s):

Adam P. Butler ◽

Jon W. Teague ◽

Keiran M. Raine ◽

Andrew Menzies ◽

David Jones ◽

...

Keyword(s):

High Throughput ◽

Genome Project ◽

Cancer Genome ◽

Analysis Pipeline ◽

High Throughput Analysis ◽

Throughput Analysis

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Next-Generation Phage Display: Integrating and Comparing Available Molecular Tools to Enable Cost-Effective High-Throughput Analysis

PLoS ONE ◽

10.1371/journal.pone.0008338 ◽

2009 ◽

Vol 4 (12) ◽

pp. e8338 ◽

Author(s):

Emmanuel Dias-Neto ◽

Diana N. Nunes ◽

Ricardo J. Giordano ◽

Jessica Sun ◽

Gregory H. Botz ◽

...

Keyword(s):

Phage Display ◽

High Throughput ◽

Cost Effective ◽

Next Generation ◽

Molecular Tools ◽

High Throughput Analysis ◽

Throughput Analysis

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Validation for Clinical Use of, and Initial Clinical Experience with, a Novel Approach to Population-Based Carrier Screening using High-Throughput, Next-Generation DNA Sequencing

Journal of Molecular Diagnostics ◽

10.1016/j.jmoldx.2013.10.006 ◽

2014 ◽

Vol 16 (2) ◽

pp. 180-189 ◽

Author(s):

Stephanie Hallam ◽

Heather Nelson ◽

Valerie Greger ◽

Cynthia Perreault-Micale ◽

Jocelyn Davie ◽

...

Keyword(s):

Dna Sequencing ◽

Clinical Experience ◽

High Throughput ◽

Population Based ◽

Carrier Screening ◽

Clinical Use ◽

Next Generation ◽

Next Generation Dna Sequencing ◽

Novel Approach ◽

Initial Clinical Experience

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DDBJ Read Annotation Pipeline: A Cloud Computing-Based Pipeline for High-Throughput Analysis of Next-Generation Sequencing Data

DNA Research ◽

10.1093/dnares/dst017 ◽

2013 ◽

Vol 20 (4) ◽

pp. 383-390 ◽

Author(s):

H. Nagasaki ◽

T. Mochizuki ◽

Y. Kodama ◽

S. Saruhashi ◽

S. Morizaki ◽

...

Keyword(s):

Cloud Computing ◽

Next Generation Sequencing ◽

High Throughput ◽

Next Generation Sequencing Data ◽

Next Generation ◽

Sequencing Data ◽

High Throughput Analysis ◽

Annotation Pipeline ◽

Throughput Analysis ◽

Generation Sequencing

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A High-Throughput Pruning-based Pair-Hidden-Markov-Model Hardware Accelerator for Next-Generation DNA Sequencing

IEEE Solid-State Circuits Letters ◽

10.1109/lssc.2020.3045148 ◽

2020 ◽

pp. 1-1

Author(s):

Xiao Wu ◽

Arun Subramaniyan ◽

Zhehong Wang ◽

Satish Narayanasamy ◽

Reetuparna Das ◽

...

Keyword(s):

Markov Model ◽

Dna Sequencing ◽

Hidden Markov Model ◽

High Throughput ◽

Hidden Markov ◽

Hardware Accelerator ◽

Next Generation ◽

Next Generation Dna Sequencing

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High-Throughput Analysis Pipeline for Achieving Simple Low-Copy Wheat and Barley Transgenics

Methods in Molecular Biology - Crop Breeding ◽

10.1007/978-1-4939-0446-4_18 ◽

2014 ◽

pp. 239-252 ◽

Author(s):

Nataliya Kovalchuk

Keyword(s):

High Throughput ◽

Analysis Pipeline ◽

High Throughput Analysis ◽

Throughput Analysis

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A highly parallel next-generation DNA sequencing data analysis pipeline in Hadoop

2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) ◽

10.1109/bibm.2015.7359781 ◽

2015 ◽

Author(s):

Kareem S. Aggour ◽

Vijay S. Kumar ◽

Dipen P. Sangurdekar ◽

Lee A. Newberg ◽

Chinnappa D. Kodira

Keyword(s):

Data Analysis ◽

Dna Sequencing ◽

Next Generation ◽

Sequencing Data ◽

Analysis Pipeline ◽

Next Generation Dna Sequencing ◽

Data Analysis Pipeline ◽

Sequencing Data Analysis

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Abstract 5143: From sequencing data to mutation spectra: a high throughput analysis pipeline.

10.1158/1538-7445.am2013-5143 ◽

2013 ◽

Author(s):

David Jones ◽

Adam P. Butler ◽

Jon W. Teague ◽

Keiran M. Raine ◽

Andrew Menzies ◽

...

Keyword(s):

High Throughput ◽

Sequencing Data ◽

Analysis Pipeline ◽

High Throughput Analysis ◽

Throughput Analysis ◽

Mutation Spectra

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High-throughput analysis of the mutagenic and cytotoxic properties of DNA lesions by next-generation sequencing

Nucleic Acids Research ◽

10.1093/nar/gkr159 ◽

2011 ◽

Vol 39 (14) ◽

pp. 5945-5954 ◽

Author(s):

Bifeng Yuan ◽

Jianshuang Wang ◽

Huachuan Cao ◽

Ruobai Sun ◽

Yinsheng Wang

Keyword(s):

Next Generation Sequencing ◽

High Throughput ◽

Dna Lesions ◽

Next Generation ◽

High Throughput Analysis ◽

Throughput Analysis ◽

Generation Sequencing

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