Simultaneous Attenuation Correction, Scatter Correction, and Denoising in PET Imaging with Deep Learning

Author(s):  
Jicun Hu ◽  
William Whiteley ◽  
Xiang Zhang ◽  
Chuanyu Zhou ◽  
Vladimir Panin
Electronics ◽  
2021 ◽  
Vol 10 (15) ◽  
pp. 1836
Author(s):  
Bo-Hye Choi ◽  
Donghwi Hwang ◽  
Seung-Kwan Kang ◽  
Kyeong-Yun Kim ◽  
Hongyoon Choi ◽  
...  

The lack of physically measured attenuation maps (μ-maps) for attenuation and scatter correction is an important technical challenge in brain-dedicated stand-alone positron emission tomography (PET) scanners. The accuracy of the calculated attenuation correction is limited by the nonuniformity of tissue composition due to pathologic conditions and the complex structure of facial bones. The aim of this study is to develop an accurate transmission-less attenuation correction method for amyloid-β (Aβ) brain PET studies. We investigated the validity of a deep convolutional neural network trained to produce a CT-derived μ-map (μ-CT) from simultaneously reconstructed activity and attenuation maps using the MLAA (maximum likelihood reconstruction of activity and attenuation) algorithm for Aβ brain PET. The performance of three different structures of U-net models (2D, 2.5D, and 3D) were compared. The U-net models generated less noisy and more uniform μ-maps than MLAA μ-maps. Among the three different U-net models, the patch-based 3D U-net model reduced noise and cross-talk artifacts more effectively. The Dice similarity coefficients between the μ-map generated using 3D U-net and μ-CT in bone and air segments were 0.83 and 0.67. All three U-net models showed better voxel-wise correlation of the μ-maps compared to MLAA. The patch-based 3D U-net model was the best. While the uptake value of MLAA yielded a high percentage error of 20% or more, the uptake value of 3D U-nets yielded the lowest percentage error within 5%. The proposed deep learning approach that requires no transmission data, anatomic image, or atlas/template for PET attenuation correction remarkably enhanced the quantitative accuracy of the simultaneously estimated MLAA μ-maps from Aβ brain PET.


2018 ◽  
Vol 5 (1) ◽  
Author(s):  
Fang Liu ◽  
Hyungseok Jang ◽  
Richard Kijowski ◽  
Gengyan Zhao ◽  
Tyler Bradshaw ◽  
...  

Author(s):  
Antonella D. Pontoriero ◽  
Giovanna Nordio ◽  
Rubaida Easmin ◽  
Alessio Giacomel ◽  
Barbara Santangelo ◽  
...  

2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Karim Armanious ◽  
Tobias Hepp ◽  
Thomas Küstner ◽  
Helmut Dittmann ◽  
Konstantin Nikolaou ◽  
...  

2009 ◽  
Vol 12 (3) ◽  
pp. 250-258 ◽  
Author(s):  
Jin Su Kim ◽  
Jae Sung Lee ◽  
Min-Hyun Park ◽  
Kyeong Min Kim ◽  
Seung-Ha Oh ◽  
...  

2021 ◽  
Author(s):  
Ashley Gillman ◽  
Stephen Rose ◽  
Jye Smith ◽  
Jason A Dowling ◽  
Nicholas Dowson

Abstract Background / AimsPatient motion during positron emission tomography (PET) imaging can corrupt the image by causing blurring and quantitation error due to misalignment with the attenuation correction image. Data-driven techniques for tracking motion in PET imaging allow for retrospective motion correction, where motion may not have been prospectively anticipated.MethodsA two minute PET acquisition of a Hoffman phantom was acquired on a Bi- ograph mCT Flow, during which the phantom was rocked, simulating periodic motion with varying frequency. Motion was tracked using the sensitivity method, the axial centre-of-mass (COM) method, a novel 3D-COM method, and the principal component analysis (PCA) method. A separate two minute acquisition was acquired with no motion as a gold standard. The tracking signal was discretised into 10 gates using k-means clustering. Motion was modelled and corrected using the reconstruct-transform-add (RTA) technique, leveraging Multimodal Image Registration using Block-matching and Robust Regression (Mirorr) for rigid registration of non- attenuation-corrected 4D PET and Software for Tomographic Image Reconstruction (STIR) for PET reconstructions. Evaluation was performed by segmenting white matter (WM) and grey matter (GM) in the attenuation correction computed tomography (CT). The mean uptake in the region of GM was compared with that in the WM region. Additionally, the difference between the intensity distributions of WM and GM regions was measured with the t-statistic from a Welch's t-test.ResultsDifference in the mean distribution of WM to GM ranked the techniques in order of efficacy: no correction, sensitivity, axial-COM, 3D-COM, PCA, no motion. PCA correction had a great WM/GM separation measured by the t-value than the no motion scan. This was attributed to interpolation blurring during motion correction reducing class variance.ConclusionOf the techniques examined, PCA was found to be most effective for tracking rigid motion. The sensitivity and axial-COM techniques are mostly sensitive to axial motion, and so were ineffective in this phantom experiment. 3D-COM demonstrates improved transaxial motion sensitivity, but not to the level of effectiveness of PCA.


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