scholarly journals Geochemical and microbial community determinants of reductive dechlorination at a site biostimulated with glycerol

2016 ◽  
Vol 19 (3) ◽  
pp. 968-981 ◽  
Author(s):  
Siavash Atashgahi ◽  
Yue Lu ◽  
Ying Zheng ◽  
Edoardo Saccenti ◽  
Maria Suarez-Diez ◽  
...  
2020 ◽  
Vol 9 (15) ◽  
Author(s):  
Dominik Schneider ◽  
Nils Aßmann ◽  
Dennis Wicke ◽  
Anja Poehlein ◽  
Rolf Daniel

Nine metagenomes derived from university hospital effluent, at different stages of wastewater treatment, and the river adjacent to the wastewater treatment plant in Göttingen, Germany, were analyzed. Bacteria was the dominant domain and mainly comprised Proteobacteria, Firmicutes, Bacteroidetes, and Actinobacteria. The microbiomes harbored a diverse microbial community with a site-specific structure.


2011 ◽  
Vol 46 (2) ◽  
pp. 1044-1054 ◽  
Author(s):  
Patrick K. H. Lee ◽  
F. Warnecke ◽  
Eoin L. Brodie ◽  
Tamzen W. Macbeth ◽  
Mark E. Conrad ◽  
...  

2001 ◽  
Vol 1 ◽  
pp. 500-504 ◽  
Author(s):  
Teri C. Balser

We evaluated the microbial communities in three Hawaiian forest soils along a natural fertility gradient and compared their distinct responses to long-term nitrogen (N) additions. The sites studied have the same elevation, climate, and dominant vegetation, but vary in age of development, and thus in soil nutrient availability and nutrient limitation to plant growth. Fertilized plots at each site have received 100 kg ha year-1N addition for at least 8 years. Soil parameters, water content, pH, and ammonium and nitrate availability differed by site, but not between control and N-addition treatments within a site at the time of sampling. Microbial biomass also varied by site, but was not affected by N addition. In contrast, microbial community composition (measured by phospholipid analysis) varied among sites and between control and N-addition plots within a site. These data suggest that microbial community composition responds to N addition even when plant net primary productivity is limited by nutrients other than N. This may have implications for the behavior of forests impacted by atmospheric N deposition that are considered to be “nitrogen saturated,” yet still retain N in the soil.


mBio ◽  
2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Sara Gushgari-Doyle ◽  
Ronald S. Oremland ◽  
Ray Keren ◽  
Shaun M. Baesman ◽  
Denise M. Akob ◽  
...  

ABSTRACT In aquifers, acetylene (C2H2) is a product of abiotic degradation of trichloroethene (TCE) catalyzed by in situ minerals. C2H2 can, in turn, inhibit multiple microbial processes including TCE dechlorination and metabolisms that commonly support dechlorination, in addition to supporting the growth of acetylenotrophic microorganisms. Previously, C2H2 was shown to support TCE reductive dechlorination in synthetic, laboratory-constructed cocultures containing the acetylenotroph Pelobacter sp. strain SFB93 and Dehalococcoides mccartyi strain 195 or strain BAV1. In this study, we demonstrate TCE and perchloroethene (PCE) reductive dechlorination by a microbial community enriched from contaminated groundwater and amended with C2H2 as the sole electron donor and organic carbon source. The metagenome of the stable, enriched community was analyzed to elucidate putative community functions. A novel anaerobic acetylenotroph in the phylum Actinobacteria was identified using metagenomic analysis. These results demonstrate that the coupling of acetylenotrophy and reductive dechlorination can occur in the environment with native bacteria and broaden our understanding of biotransformation at contaminated sites containing both TCE and C2H2. IMPORTANCE Understanding the complex metabolisms of microbial communities in contaminated groundwaters is a challenge. PCE and TCE are among the most common groundwater contaminants in the United States that, when exposed to certain minerals, exhibit a unique abiotic degradation pathway in which C2H2 is a product. C2H2 can act as both an inhibitor of TCE dechlorination and of supporting metabolisms and an energy source for acetylenotrophic bacteria. Here, we combine laboratory microcosm studies with computational approaches to enrich and characterize an environmental microbial community that couples two uncommon metabolisms, demonstrating unique metabolic interactions only yet reported in synthetic, laboratory-constructed settings. Using this comprehensive approach, we have identified the first reported anaerobic acetylenotroph in the phylum Actinobacteria, demonstrating the yet-undescribed diversity of this metabolism that is widely considered to be uncommon.


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