Next generation sequencing confirms T‐cell clonality in a subset of pediatric pityriasis lichenoides

Author(s):  
Shyam S. Raghavan ◽  
Jennifer Y. Wang ◽  
Alejandro A. Gru ◽  
Ann L. Marqueling ◽  
Joyce M.C. Teng ◽  
...  
2015 ◽  
Vol 73 (2) ◽  
pp. 228-236.e2 ◽  
Author(s):  
Kari E. Sufficool ◽  
Christina M. Lockwood ◽  
Haley J. Abel ◽  
Ian S. Hagemann ◽  
Jonathan A. Schumacher ◽  
...  

2021 ◽  
Author(s):  
Ahmed S Fahad ◽  
Cheng Yu Chung ◽  
Sheila N. Lopez Acevedo ◽  
Nicoleen Boyle ◽  
Bharat Madan ◽  
...  

Functional analyses of the T cell receptor (TCR) landscape can reveal critical information about protection from disease and molecular responses to vaccines. However, it has proven difficult to combine advanced next-generation sequencing technologies with methods to decode the peptide-major histocompatibility complex (pMHC) specificity of individual TCRs. Here we developed a new high-throughput approach to enable repertoire-scale functional evaluations of natively paired TCRs. In particular, we leveraged the immortalized nature of physically linked TCRα:β amplicon libraries to analyze binding against multiple recombinant pMHCs on a repertoire scale. To exemplify the utility of this approach, we also performed affinity-based functional mapping in conjunction with quantitative next-generation sequencing to track antigen- specific TCRs. These data successfully validated a new immortalization and screening platform to facilitate detailed molecular analyses of human TCRs against diverse antigen targets associated with health, vaccination, or disease.


2015 ◽  
Vol 4 (11) ◽  
pp. e1030561 ◽  
Author(s):  
Miran Jang ◽  
Poh-Yin Yew ◽  
Kosei Hasegawa ◽  
Yuji Ikeda ◽  
Keiichi Fujiwara ◽  
...  

2013 ◽  
Vol 4 ◽  
Author(s):  
Ilgar Z. Mamedov ◽  
Olga V. Britanova ◽  
Ivan V. Zvyagin ◽  
Maria A. Turchaninova ◽  
Dmitriy A. Bolotin ◽  
...  

Dermatology ◽  
2019 ◽  
Vol 236 (2) ◽  
pp. 117-122 ◽  
Author(s):  
Roberta Vasconcelos Berg ◽  
Neusa Yuriko Sakai Valente ◽  
Camilla Fanelli ◽  
Isabelle Wu ◽  
Juliana Pereira ◽  
...  

Background: Poikilodermatous mycosis fungoides (pMF) is characterized by poikiloderma areas, typically involving the major flexural areas and trunk. Its presentation can be generalized or admixed with other forms of MF. Previous studies fail to correlate the clinical presentation with prognosis and laboratory findings. Some reports show pityriasis lichenoides chronica (PLC) preceding the poikiloderma. Objectives: Correlate prognostic, histopathological and molecular aspects of pMF with its clinical presentation. Methods: Retrospective analysis of 14 cases of generalized pMF (GpMF), 22 of localized pMF (LpMF) and 17 of pMF admixed with other forms of MF (mix-pMF). Results: Female predominance and lower age at diagnosis was found in all groups compared to classic MF, a high prevalence of PLC-like lesions in the GpMF group and a high rate of hypopigmented lesions in the mix-pMF group. There were 2 deaths within the GpMF group. Histology was similar to previously reported findings, as was the prevalence of CD4 T-cell infiltrate, compared to CD8. The T-cell clonality positivity was lower in the GpMF group, compared to other groups (27% GpMF, 80% LpMF and 100% mix-pMF). Discussion: This is the first article to categorize the different forms of pMF and correlate them with clinical and laboratory findings. The dermatological presentation differs among the groups. There was a high frequency of PLC-like lesions within the GpMF group and of hypopigmented lesions in mix-pMF. The histological and immunohistochemical findings were similar to those previously reported. Aggressive treatments are not recommended due to the good prognosis of all pMF forms. The low positivity of T-cell clonality in the GpMF group should be investigated.


2000 ◽  
Vol 136 (12) ◽  
Author(s):  
Olivier Dereure ◽  
Edi Levi ◽  
Marshall E. Kadin

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