scholarly journals Applications of flow cytometry in plant pathology for genome size determination, detection and physiological status

2011 ◽  
Vol 12 (8) ◽  
pp. 815-828 ◽  
Author(s):  
LIESBET D'HONDT ◽  
MONICA HÖFTE ◽  
ERIK VAN BOCKSTAELE ◽  
LEEN LEUS
2014 ◽  
Vol 85 (10) ◽  
pp. 854-861 ◽  
Author(s):  
Tereza Veselská ◽  
Jan Svoboda ◽  
Žaneta Růžičková ◽  
Miroslav Kolařík

2020 ◽  
Vol 4 (2) ◽  
pp. 72-75
Author(s):  
Mohd Razik Midin ◽  
Muhammad Irfan Fikri ◽  
Siti Sarah Zailani

AbstractChristia vespertilionis (butterfly wing plant) is an ornamental plant originated from South East Asia with reported usage in traditional medicine practice and potential as an anticancer and antitumor. This research aims to estimate the genome size of C. vespertilionis via flow cytometry (FCM) method. The research was conducted with the optimisation of nuclear suspension preparation followed by the genome size estimation. Two chopping techniques [manual chopping (MC) and BDTM Medimachine (MM)] and two lysis buffers (Otto and LBO1) were tested. Otto buffer with manual chopping was found to be the most suitable method, generated fine DNA peak with minimum debris background, and coefficient of variation (CV) value less than 3%. Five replicates of the FCM analysis were made for the genome size determination. The estimated genome size of C. vespertilionis was found to be 3.22 pg by using Glycine max cv. Polanka (2C=2.5pg) as an external reference standard. Further comparison with other Christia species was not possible due to the lack of data on genome size. The genome size data of C. vespertilionis can be useful for future morphology and genetics studies of Christia species.


2007 ◽  
Vol 76 (3) ◽  
pp. 516-521 ◽  
Author(s):  
FRANCISCO PANZERA ◽  
RUBEN PÉREZ ◽  
JANINE RAMSEY ◽  
JOSÉ E. O’CONNOR ◽  
PAZ M. SALAZAR-SCHETTINO ◽  
...  

2015 ◽  
Vol 10 (3) ◽  
pp. 697
Author(s):  
Anggana Roy ◽  
Yasir Bashir ◽  
Irfan Ahmad Rather ◽  
Bolin Kumar Konwar

<p class="Abstract">There is abundant genetic diversity of pharmacologically important plants around the globe and this pool of genetic variation serves as the base for selection as well as for plant improvement. The major cause of such genetic diversity is the variation in their genetic material, as called genome. In the present study, an attempt was made to determine the genome size of <em>Eclipta alba</em> and <em>Aloe barbadensis</em> by flow cytometry using Pisum sativum as a reference standard. The nuclear DNA was calculated as 8.7 pg for <em>E. alba</em> and 9.0 pg for <em>A. barbadensis</em>. The genome size of <em>E. alba</em> and <em>A. barbadensis</em> was estimated to be 4.27 x 10<sup>9</sup> bp and 4.42 x 10<sup>9</sup> bp, respectively. Information on genome size and DNA content of these two pharmacologically important plants would provide a useful tool for future molecular biological investigations.</p><p> </p>


2021 ◽  
Vol 0 (0) ◽  
Author(s):  
Omri Nahor ◽  
Cristina F. Morales-Reyes ◽  
Gianmaria Califano ◽  
Thomas Wichard ◽  
Alexander Golberg ◽  
...  

Abstract Controlling the life cycle of the green macroalga Ulva (Chlorophyta) is essential to maintain its efficient aquaculture. A fundamental shift in cultivation occurs by transforming the thallus cells into gametangia and sporangia (sporulation), with the subsequent release of gametes and zoids. Sporulation occurrence depends on algal age and abiotic stimuli and is controlled by sporulation inhibitors. Thus, quantification of sporulation intensity is critical for identifying the biotic and abiotic factors that influence the transition to reproductive growth. Here, we propose to determine the sporulation index by measuring the number of released gametes using flow cytometry, in proportion to the total number of thallus cells present before the occurrence of the sporulation event. The flow cytometric measurements were validated by manually counting the number of released gametes. We observed a variation in the autofluorescence levels of the gametes which were released from the gametangia. High autofluorescence level correlated to phototactically active behaviour of the gametes. As autofluorescence levels varied between different groups of gametes related to their mobility, flow cytometry can also determine the physiological status of the gametes used as feedstock in seaweed cultivation.


2014 ◽  
Vol 92 (10) ◽  
pp. 847-851 ◽  
Author(s):  
Kelly L. Mulligan ◽  
Terra C. Hiebert ◽  
Nicholas W. Jeffery ◽  
T. Ryan Gregory

Ribbon worms (phylum Nemertea) are among several animal groups that have been overlooked in past studies of genome-size diversity. Here, we report genome-size estimates for eight species of nemerteans, including representatives of the major lineages in the phylum. Genome sizes in these species ranged more than fivefold, and there was some indication of a positive relationship with body size. Somatic endopolyploidy also appears to be common in these animals. Importantly, this study demonstrates that both of the most common methods of genome-size estimation (flow cytometry and Feulgen image analysis densitometry) can be used to assess genome size in ribbon worms, thereby facilitating additional efforts to investigate patterns of variability in nuclear DNA content in this phylum.


2021 ◽  
Author(s):  
Jani Angel J. Raymond ◽  
Mudagandur Shashi Shekhar ◽  
Vinaya Kumar Katneni ◽  
Ashok Kumar Jangham ◽  
Sudheesh Kommu Prabhudas ◽  
...  

2016 ◽  
Vol 15 (1) ◽  
Author(s):  
M. Freitas Neto ◽  
T.N.S. Pereira ◽  
I.G.C. Geronimo ◽  
A.O.N. Azevedo ◽  
S.R.R. Ramos ◽  
...  
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