Analysis of gene expression profile in colon cancer using the Cancer Genome Anatomy Project and RNA interference

2006 ◽  
Vol 7 (2) ◽  
pp. 97-102 ◽  
Author(s):  
Zhi Gang HUANG ◽  
Zhi Hua RAN ◽  
Wei LU ◽  
Shu Dong XIAO
2015 ◽  
Vol 138 (6) ◽  
pp. 1422-1431 ◽  
Author(s):  
Mitsuru Yokota ◽  
Motohiro Kojima ◽  
Youichi Higuchi ◽  
Yuji Nishizawa ◽  
Akihiro Kobayashi ◽  
...  

PPAR Research ◽  
2012 ◽  
Vol 2012 ◽  
pp. 1-16 ◽  
Author(s):  
Angelo Cerbone ◽  
Cristina Toaldo ◽  
Stefania Pizzimenti ◽  
Piergiorgio Pettazzoni ◽  
Chiara Dianzani ◽  
...  

PPARαs are nuclear receptors highly expressed in colon cells. They can be activated by the fibrates (clofibrate, ciprofibrate etc.) used to treat hyperlipidemia. Since PPARαtranscriptional activity can be negatively regulated by JNK, the inhibition of JNK activity could increase the effectiveness of PPARαligands. We analysed the effects of AS601245 (a JNK inhibitor) and clofibrate alone or in association, on proliferation, apoptosis, differentiation and the gene expression profile of CaCo-2 human colon cancer cells. Proliferation was inhibited in a dose-dependent way by clofibrate and AS601245. Combined treatment synergistically reduced cell proliferation, cyclin D1 and PCNA expression and induced apoptosis and differentiation. Reduction of cell proliferation, accompanied by the modulation of p21 expression was observed in HepG2 cells, also. Gene expression analysis revealed that some genes were highly modulated by the combined treatment and 28 genes containing PPRE were up-regulated, while clofibrate alone was ineffective. Moreover, STAT3 signalling was strongly reduced by combined treatment. After combined treatment, the binding of PPARαto PPRE increased and paralleled with the expression of the PPAR coactivator MED1. Results demonstrate that combined treatment increases the effectiveness of both compounds and suggest a positive interaction between PPARαligands and anti-inflammatory agents in humans.


Chemotherapy ◽  
2010 ◽  
Vol 56 (1) ◽  
pp. 17-25 ◽  
Author(s):  
Å. Wallin ◽  
P. Francis ◽  
M. Nilbert ◽  
J. Svanvik ◽  
X.-F. Sun

2010 ◽  
Vol 138 (3) ◽  
pp. 958-968 ◽  
Author(s):  
J. Joshua Smith ◽  
Natasha G. Deane ◽  
Fei Wu ◽  
Nipun B. Merchant ◽  
Bing Zhang ◽  
...  

2020 ◽  
Vol 155 (1) ◽  
pp. 87-96
Author(s):  
Benjamin J Van Treeck ◽  
Taofic Mounajjed ◽  
Roger K Moreira ◽  
Mushfig Orujov ◽  
Daniela S Allende ◽  
...  

Abstract Objectives Steatohepatitic hepatocellular carcinoma is a distinct variant of hepatocellular carcinoma strongly associated with underlying nonalcoholic steatohepatitis. The molecular biology of steatohepatitic hepatocellular carcinoma is not fully elucidated, and thus we aimed to investigate the molecular underpinnings of this entity. Methods Transcriptomic analysis using RNAseq was performed on eight tumor-nonneoplastic pairs of steatohepatitic hepatocellular carcinoma with comparison to conventional hepatocellular carcinoma transcriptomes curated in The Cancer Genome Atlas. Immunohistochemistry was used to validate key RNA-level findings. Results Steatohepatitic hepatocellular carcinoma demonstrated a distinctive differential gene expression profile compared with The Cancer Genome Atlas curated conventional hepatocellular carcinomas (n = 360 cases), indicating the distinctive steatohepatitic hepatocellular carcinoma morphology is associated with a unique gene expression profile. Pathway analysis comparing tumor-nonneoplastic pairs revealed significant upregulation of the hedgehog pathway based on GLI1 overexpression and significant downregulation of carnitine palmitoyltransferase 2 transcript. Glutamine synthetase transcript was significantly upregulated, and fatty acid binding protein 1 transcript was significantly downregulated and immunohistochemically confirmed, indicating steatohepatitic hepatocellular carcinoma tumor cells display a zone 3 phenotype. Conclusions Steatohepatitic hepatocellular carcinoma demonstrates a distinctive morphology and gene expression profile, phenotype of zone 3 hepatocytes, and activation of the hedgehog pathway and repression of carnitine palmitoyltransferase 2, which may be important in tumorigenesis.


2008 ◽  
Vol 24 (3) ◽  
pp. 245-260 ◽  
Author(s):  
Liang Qiao ◽  
Gloria H. Y. Li ◽  
Yun Dai ◽  
Jide Wang ◽  
Zesong Li ◽  
...  

2008 ◽  
Vol 134 (4) ◽  
pp. A-384
Author(s):  
Liang Qiao ◽  
Gloria HY Li ◽  
Yun Dai ◽  
Zesong Li ◽  
Bing Zou ◽  
...  

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