scholarly journals Environmental DNA effectively captures functional diversity of coastal fish communities

2020 ◽  
Author(s):  
Giorgio Aglieri ◽  
Charles Baillie ◽  
Stefano Mariani ◽  
Carlo Cattano ◽  
Antonio Calò ◽  
...  
Keyword(s):  
Functional Diversity ◽  
Fish Communities ◽  
Environmental Dna ◽  
Coastal Fish

scholarly journals Factors structuring estuarine and coastal fish communities across Japan using environmental DNA metabarcoding

2021 ◽  
Vol 121 ◽  
pp. 107216
Author(s):  
Manabu Kume ◽  
Edouard Lavergne ◽  
Hyojin Ahn ◽  
Yuki Terashima ◽  
Kohmei Kadowaki ◽  
...  
Keyword(s):  
Fish Communities ◽  
Environmental Dna ◽  
Coastal Fish ◽  
Dna Metabarcoding

Environmental DNA for functional diversity

2018 ◽  
Author(s):  
Pierre Taberlet ◽  
Aurélie Bonin ◽  
Lucie Zinger ◽  
Eric Coissac
Keyword(s):  
Functional Groups ◽  
Functional Diversity ◽  
Environmental Dna ◽  
Soil Organisms ◽  
Meaningful Information ◽  
Dna Metabarcoding ◽  
Pros And Cons ◽  
Target Community

Chapter 10 “Environmental DNA for functional diversity” discusses the potential of environmental DNA to assess functional diversity. It first focuses on DNA metabarcoding and discusses the extent to which this approach can be used and/or optimized to retrieve meaningful information on the functions of the target community. This knowledge usually involves coarsely defined functional groups (e.g., woody, leguminous, graminoid plants; shredders or decomposer soil organisms; pathogenicity or decomposition role of certain microorganisms). Chapter 10 then introduces metagenomics and metatranscriptomics approaches, their advantages, but also the challenges and solutions to appropriately sampling, sequencing these complex DNA/RNA populations. Chapter 10 finally presents several strategies and software to analyze metagenomes/metatranscriptomes, and discusses their pros and cons.

scholarly journals Environmental DNA metabarcoding uncovers environmental correlates of fish communities in spatially heterogeneous freshwater habitats

2021 ◽  
Vol 126 ◽  
pp. 107698
Author(s):  
Petr Blabolil ◽  
Lynsey R. Harper ◽  
Štěpánka Říčanová ◽  
Graham Sellers ◽  
Cristina Di Muri ◽  
...  
Keyword(s):  
Fish Communities ◽  
Environmental Dna ◽  
Environmental Correlates ◽  
Dna Metabarcoding ◽  
Freshwater Habitats

Limiting similarity, niche filtering and functional diversity in coastal lagoon fish communities

2007 ◽  
Vol 71 (3-4) ◽  
pp. 443-456 ◽  
Author(s):  
David Mouillot ◽  
Olivier Dumay ◽  
Jean Antoine Tomasini
Keyword(s):  
Functional Diversity ◽  
Coastal Lagoon ◽  
Fish Communities ◽  
Limiting Similarity

Modeling species richness controlled by community-intrinsic and community-extrinsic processes: coastal fish communities as an example

2002 ◽  
Vol 44 (3) ◽  
pp. 165-178 ◽  
Author(s):  
N. C. Stenseth ◽  
K. Lekve ◽  
J. Gj�s�ter
Keyword(s):  
Species Richness ◽  
Fish Communities ◽  
Coastal Fish

scholarly journals Environmental DNA metabarcoding uncovers environmental correlates of fish communities in spatially heterogeneous freshwater habitats

2020 ◽  
Author(s):  
Petr Blabolil ◽  
Lynsey Harper ◽  
Stepanka Ricanova ◽  
Graham Sellers ◽  
Cristina Di Muri ◽  
...  
Keyword(s):  
Fish Communities ◽  
Environmental Dna ◽  
Environmental Correlates ◽  
Dna Metabarcoding ◽  
Freshwater Habitats

scholarly journals Usefulness and limitations of sample pooling for environmental DNA metabarcoding of freshwater fish communities

2017 ◽  
Vol 7 (1) ◽  
Author(s):  
Hirotoshi Sato ◽  
Yuki Sogo ◽  
Hideyuki Doi ◽  
Hiroki Yamanaka
Keyword(s):  
Freshwater Fish ◽  
Fish Communities ◽  
Environmental Dna ◽  
Dna Metabarcoding ◽  
Sample Pooling

scholarly journals Seasonal variation in the relative importance of assembly processes in marine fish communities as determined by environmental DNA analyses

2021 ◽  
Author(s):  
Naoto Shinohara ◽  
Yuki Hongo ◽  
Momoko Ichinokawa ◽  
Shota Nishijima ◽  
Shuhei Sawayama ◽  
...  
Keyword(s):  
Marine Fish ◽  
Seasonal Changes ◽  
Variation Partitioning ◽  
Environmental Filtering ◽  
Fish Communities ◽  
Environmental Dna ◽  
Compositional Variation ◽  
Short Time Scale ◽  
Relative Importance ◽  
Spatial Processes

Compositional variation among local communities is a result of environmental (e.g., environmental filtering) and spatial (e.g., dispersal limitation) processes. Growing evidence suggests that their relative importance varies temporally, but little is known about the short-time scale dynamics, that is, seasonality. Using marine fish communities in a Japanese bay as a model system, we tested the hypothesis that seasonal changes in the environment induce a shift in the relative importance of environmental and spatial processes. We used one-year monthly monitoring data obtained using environmental DNA and conducted a variation partitioning analysis to decompose the two processes. The relative importance of environmental and spatial processes was comparable averaged over the year but changed seasonally. During summer, when lower dissolved oxygen concentrations may adversely affect organisms, species composition was more explained by space despite larger environmental heterogeneity than in other seasons. This suggests that environmental processes weakened during the season with extremely severe environments, likely due to the random loss of individuals. We conclude that the assembly processes of communities of mobile organisms, such as fishes, can shift even within a year in response to seasonal changes in environmental severity. The results also indicate the applicability of eDNA techniques for community assembly studies.

scholarly journals Influences of the area, shape and connectivity of coastal lakes on the taxonomic and functional diversity of fish communities in Southern Brazil

2019 ◽  
Vol 36 ◽  
pp. 1-12 ◽  
Author(s):  
Sandra Maria Hartz ◽  
Elise Amador Rocha ◽  
Fernanda Thiesen Brum ◽  
André Luís Luza ◽  
Taís de Fátima Ramos Guimarães ◽  
...  
Keyword(s):  
Functional Diversity ◽  
Fish Communities ◽  
Taxonomic Diversity ◽  
Analytical Framework ◽  
Freshwater Species ◽  
Coastal Lakes ◽  
Causal Connections ◽  
Functional Richness ◽  
Dispersal Abilities ◽  
Functional Evenness

In this study we investigated the influence of landscape variables on the alpha taxonomic and functional diversity of fish communities in coastal lakes. We built an analytical framework that included possible causal connections among variables, which we analyzed using path analysis. We obtained landscape metrics for the area, shape and connectivity (estuary connectivity and primary connectivity to neighboring lakes) of 37 coastal lakes in the Tramandaí River Basin. We collected fish data from 49 species using standardized sampling with gillnets and obtained a set of traits related to dispersal abilities and food acquisition. The model that best explained the taxonomic diversity and functional richness took into account the shape of the lakes. Functional richness was also explained by estuary connectivity. Functional evenness and dispersion were not predicted by area or connectivity, but they were influenced by the abundant freshwater species. This indicates that all lakes support most of the regional functional diversity. The results highlight the importance of the dispersal process in this lake system and allow the conclusion that considering multiple diversity dimensions can aid the conservation of local and regional fish communities.

Monitoring freshwater fish communities in large rivers using environmental DNA metabarcoding and a long‐term electrofishing survey

2020 ◽  
Vol 97 (2) ◽  
pp. 444-452 ◽  
Author(s):  
Aurélie Goutte ◽  
Noëlie Molbert ◽  
Sabrina Guérin ◽  
Robin Richoux ◽  
Vincent Rocher
Keyword(s):  
Freshwater Fish ◽  
Fish Communities ◽  
Environmental Dna ◽  
Large Rivers ◽  
Dna Metabarcoding
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