Quantum chemical ab initio modeling of molecular structure of K, Mg aspartate salts in aqueous media

2008 ◽  
Author(s):  
Vladimir S. Soldatov ◽  
Alexander L. Pushkarchuk ◽  
Zoya I. Kuvaeva
1992 ◽  
Vol 47 (7-8) ◽  
pp. 869-876 ◽  
Author(s):  
Gerhard Raabe ◽  
Wolfgang Karl ◽  
Dieter Enders ◽  
Jörg Fleischhauer

Abstract X-ray structure determination of the enamine (Z)-4-(6'-t-butoxycarbonyl-2',2'-dimethyl-5'-phenyl- 3'-hexen-3'-yl)morpholine (1) reveals that certain bulky groups may enforce a relative orientation of the molecular subunits without conjugative interaction between the nitrogen lone pair and the olefinic double bond. According to the results of quantum chemical ab initio calculations the experimentally found arrangement would be the least favourable one in the absence of such substituents. A careful analysis of the molecular structure of 1 shows that this unusual arrangement is due to the presence of both, the a- and the ß-substituent. In (E)-4-(3'-t-butoxycarbonylmethyl-1'-phenyl-1'-penten-1'-yl)morpholine (2) rather the nitrogen lone pair than the phenyl n system is in conjugation with the olefinic double bound. The results of ab initio calculations on model compounds show that conjugation of the double bond with the nitrogen lone pair is by 2 - 6 kcal/mol more favourable than conjugative interaction between the phenyl group and the C = C bond. Closer examination of the molecular structure of 2, however, led to the conclusion that it is predominantly the ß-substituent which forces the phenyl ring in a position where conjugation with the enamine double bond is not possible


2019 ◽  
Vol 6 (438) ◽  
pp. 21-29
Author(s):  
Zh.B. Satpaeva ◽  
◽  
O.A. Nurkenov ◽  
K.M. Turdybekov ◽  
L.K. Abulyaissova ◽  
...  

2020 ◽  
Vol 16 (2) ◽  
pp. 93-103 ◽  
Author(s):  
Piotr Kawczak ◽  
Leszek Bober ◽  
Tomasz Bączek

Background: Pharmacological and physicochemical classification of bases’ selected analogues of nucleic acids is proposed in the study. Objective: Structural parameters received by the PCM (Polarizable Continuum Model) with several types of calculation methods for the structures in vacuo and in the aquatic environment together with the huge set of extra molecular descriptors obtained by the professional software and literature values of biological activity were used to search the relationships. Methods: Principal Component Analysis (PCA) together with Factor Analysis (FA) and Multiple Linear Regressions (MLR) as the types of the chemometric approach based on semi-empirical ab initio molecular modeling studies were performed. Results: The equations with statistically significant descriptors were proposed to demonstrate both the common and differentiating characteristics of the bases' analogues of nucleic acids based on the quantum chemical calculations and biological activity data. Conclusion: The obtained QSAR models can be used for predicting and explaining the activity of studied molecules.


1990 ◽  
Vol 55 (1) ◽  
pp. 10-20 ◽  
Author(s):  
Stanislav Böhm ◽  
Josef Kuthan

Ab initio MO optimalization of the 2H-pyran molecule leads to a defined equilibrium geometry of this so far not identified heterocyclic molecule and to a physical justification of its existence. More advanced nonempirical wavefunctions and temperature corrections indicate that heterocyclic molecule I is energetically less stable than non-cyclic isomers II and III. Wavenumbers of fundamental vibrational transitions of heterocycle I and also known (2E)-2,4-pentadienal (IIIb were calculated using 3-21 G wavefunctions. The vibrational spectrum of compound I is predicted on the basis of correlation corrections.


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