ANGEL2 is a member of the CCR4 family of deadenylases with 2′,3′-cyclic phosphatase activity

Science ◽  
2020 ◽  
Vol 369 (6503) ◽  
pp. 524-530
Author(s):  
Paola H. Pinto ◽  
Alena Kroupova ◽  
Alexander Schleiffer ◽  
Karl Mechtler ◽  
Martin Jinek ◽  
...  

RNA molecules are frequently modified with a terminal 2′,3′-cyclic phosphate group as a result of endonuclease cleavage, exonuclease trimming, or de novo synthesis. During pre-transfer RNA (tRNA) and unconventional messenger RNA (mRNA) splicing, 2′,3′-cyclic phosphates are substrates of the tRNA ligase complex, and their removal is critical for recycling of tRNAs upon ribosome stalling. We identified the predicted deadenylase angel homolog 2 (ANGEL2) as a human phosphatase that converts 2′,3′-cyclic phosphates into 2′,3′-OH nucleotides. We analyzed ANGEL2’s substrate preference, structure, and reaction mechanism. Perturbing ANGEL2 expression affected the efficiency of pre-tRNA processing, X-box–binding protein 1 (XBP1) mRNA splicing during the unfolded protein response, and tRNA nucleotidyltransferase 1 (TRNT1)–mediated CCA addition onto tRNAs. Our results indicate that ANGEL2 is involved in RNA pathways that rely on the ligation or hydrolysis of 2′,3′-cyclic phosphates.

2021 ◽  
Vol 14 (684) ◽  
pp. eaaz4401
Author(s):  
Chandrima Ghosh ◽  
Jagadeesh Kumar Uppala ◽  
Leena Sathe ◽  
Charlotte I. Hammond ◽  
Ashish Anshu ◽  
...  

During cellular stress in the budding yeast Saccharomyces cerevisiae, an endoplasmic reticulum (ER)–resident dual kinase and RNase Ire1 splices an intron from HAC1 mRNA in the cytosol, thereby releasing its translational block. Hac1 protein then activates an adaptive cellular stress response called the unfolded protein response (UPR) that maintains ER homeostasis. The polarity-inducing protein kinases Kin1 and Kin2 contribute to HAC1 mRNA processing. Here, we showed that an RNA-protein complex that included the endocytic proteins Pal1 and Pal2 mediated HAC1 mRNA splicing downstream of Kin1 and Kin2. We found that Pal1 and Pal2 bound to the 3′ untranslated region (3′UTR) of HAC1 mRNA, and a yeast strain lacking both Pal1 and Pal2 was deficient in HAC1 mRNA processing. We also showed that Kin1 and Kin2 directly phosphorylated Pal2, and that a nonphosphorylatable Pal2 mutant could not rescue the UPR defect in a pal1Δ pal2Δ strain. Thus, our work uncovers a Kin1/2-Pal2 signaling pathway that coordinates HAC1 mRNA processing and ER homeostasis.


Blood ◽  
2006 ◽  
Vol 108 (11) ◽  
pp. 499-499
Author(s):  
Mark A. Murakami ◽  
David S. Grenda ◽  
Jhuma Ghatak ◽  
Laurence A. Boxer ◽  
David C. Dale ◽  
...  

Abstract Severe congenital neutropenia (SCN) is characterized by severe chronic neutropenia and promyelocyte accumulation in the bone marrow. Mutations in the ELA2 gene encoding neutrophil elastase (NE) are responsible for most cases of SCN and nearly all cases of cyclic neutropenia (CN), a related but milder disorder of granulopoiesis. To date, 47 distinct, mostly missense, mutations have been reported in patients with CN or SCN; most segregate with one phenotype, suggesting a genotype-phenotype correlation. While genetic studies suggest that ELA2 mutations act in a dominant, cell-intrinsic fashion to disrupt granulopoiesis, the molecular mechanisms by which they do so are unknown. Given the functional heterogeneity of NE mutants in SCN, we hypothesized that ELA2 mutations disrupt granulopoiesis by leading to the production of NE proteins that misfold, activate the unfolded protein response (UPR), and ultimately trigger apoptosis in granulocytic precursors. The UPR is a well-characterized cellular program that acts to ameliorate the accumulation of misfolded proteins in the endoplasmic reticulum (ER) via general attenuation of translation initiation, upregulated expression of ER resident protein chaperones, and increased ER-associated degradation (ERAD) of misfolded proteins. Persistence of the folding defect promotes apoptosis. We previously showed that expression of mutant NE induces BiP/GRP78 gene expression, a classic biochemical marker of the UPR, and impairs clonogenic capacity in a myelomonocytic cell line. To further explore the UPR hypothesis, we employed a transient transfection assay in which granulocytic precursors cultured from human cord blood-derived CD34+ cells express wild type or mutant forms of NE associated with SCN (V72M, G185R, G192pter), CN (R191Q), or both SCN and CN (P110L). Here we show that: Expression of SCN-related NE mutants but not R191Q NE induces BiP mRNA expression and XBP1 mRNA splicing, classic markers of the UPR; The degree of the UPR induced by each mutant in our study roughly correlates with the severity of its associated clinical phenotype. Notably, G185R NE, associated with the most severe clinical phenotype, induces the greatest BiP expression; Expression of SCN-related NE mutants is associated with increased apoptosis; and Protease-deficient double mutant forms of NE still induce the UPR and trigger apoptosis, suggesting that mutant NE disrupts granulopoiesis by a protease-independent mechanism. We next analyzed primary granulocytic precursors from 6 ELA2-positive SCN patients and 5 healthy donors and detected a 5.7-fold increase in BiP mRNA expression (p=.06) and a 2.5-fold increase in XBP1 mRNA splicing (p=.03) in the SCN samples. In addition, confocal microscopy of normal and ELA2-positive SCN bone marrow cells stained for NE reveals a marked reduction in NE expression in SCN cells, consistent with the UPR hypothesis. Together, these data strongly support a UPR model of SCN disease pathogenesis, placing SCN in a growing list of human diseases caused by misfolded proteins. More importantly, SCN represents the first known case of a congenital disorder caused by UPR-induced apoptosis.


2014 ◽  
Vol 34 (48) ◽  
pp. 16076-16085 ◽  
Author(s):  
A. Ray ◽  
S. Zhang ◽  
C. Rentas ◽  
K. A. Caldwell ◽  
G. A. Caldwell

eLife ◽  
2021 ◽  
Vol 10 ◽  
Author(s):  
Weihan Li ◽  
Kelly Crotty ◽  
Diego Garrido Ruiz ◽  
Mark Voorhies ◽  
Carlos Rivera ◽  
...  

The unfolded protein response (UPR) maintains protein folding homeostasis in the endoplasmic reticulum (ER). In metazoan cells, the Ire1 branch of the UPR initiates two functional outputs—non-conventional mRNA splicing and selective mRNA decay (RIDD). By contrast, Ire1 orthologs from Saccharomyces cerevisiae and Schizosaccharomyces pombe are specialized for only splicing or RIDD, respectively. Previously, we showed that the functional specialization lies in Ire1's RNase activity, which is either stringently splice-site specific or promiscuous (W. Li et al., 2018). Here, we developed an assay that reports on Ire1's RNase promiscuity. We found that conversion of two amino acids within the RNase domain of S. cerevisiae Ire1 to their S. pombe counterparts rendered it promiscuous. Using biochemical assays and computational modeling, we show that the mutations rewired a pair of salt bridges at Ire1 RNase domain's dimer interface, changing its protomer alignment. Thus, Ire1 protomer alignment affects its substrates specificity.


2020 ◽  
Vol 39 (12) ◽  
pp. 1690-1699
Author(s):  
H Yu ◽  
K Wen ◽  
X Zhou ◽  
Y Zhang ◽  
Z Yan ◽  
...  

The unfolded protein response (UPR) is one of a switch of autophagy and apoptosis, and the endoplasmic reticulum stress (ERS) which inducing UPR plays a role in the malformations caused by some genetic and environmental factors. Exposure to flutamide during pregnancy will also cause abnormalities in some male offspring reproductive organs such as cryptorchidism. In this study, after administered the pregnant mouse orally at a dose of 300 mg/kg body weight every day during gestational day (GD)12 to GD18, flutamide can not only caused hypospadias in the male mouse offspring but also damaged the morphology and function of their testis. And the expression of UPR-related genes and proteins, autophagy, apoptosis, and angiogenesis-related genes of the damaged/teratogenic testis and penis in the mice were investigated to determine the role of UPR in this model. It was found that flutamide activated maybe the Atg7-Atg3-Lc3 pathway through the UPR pathway, caused cells excessive autophagy and apoptosis, and inhibited the formation of penile and testicular blood vessels by activating UPR and affecting the messenger RNA level of vascular endothelial growth factor and hypoxia-inducible factor 1.


2016 ◽  
Vol 22 (3) ◽  
pp. 283-292 ◽  
Author(s):  
Osamu Takatori ◽  
Soichiro Usui ◽  
Masaki Okajima ◽  
Shuichi Kaneko ◽  
Hiroshi Ootsuji ◽  
...  

Background: The unfolded protein response (UPR) plays a pivotal role in ischemia–reperfusion (I/R) injury in various organs such as heart, brain, and liver. Sodium 4-phenylbutyrate (PBA) reportedly acts as a chemical chaperone that reduces UPR. In the present study, we evaluated the effect of PBA on reducing the UPR and protecting against myocardial I/R injury in mice. Methods: Male C57BL/6 mice were subjected to 30-minute myocardial I/R, and were treated with phosphate-buffered saline (as a vehicle) or PBA. Results: At 4 hours after reperfusion, mice treated with PBA had reduced serum cardiac troponin I levels and numbers of apoptotic cells in left ventricles (LVs) in myocardial I/R. Infarct size had also reduced in mice treated with PBA at 48 hours after reperfusion. At 2 hours after reperfusion, UPR markers, including eukaryotic initiation of the factor 2α-subunit, activating transcription factor-6, inositol-requiring enzyme-1, glucose-regulated protein 78, CCAAT/enhancer-binding protein (C/EBP) homologous protein, and caspase-12, were significantly increased in mice treated with vehicle compared to sham-operated mice. Administration of PBA significantly reduced the I/R-induced increases of these markers. Cardiac function and dimensions were assessed at 21 days after I/R. Sodium 4-phenylbutyrate dedicated to the improvement of cardiac parameters deterioration including LV end-diastolic diameter and LV fractional shortening. Consistently, PBA reduced messenger RNA expression levels of cardiac remodeling markers such as collagen type 1α1, brain natriuretic peptide, and α skeletal muscle actin in LV at 21 days after I/R. Conclusion: Unfolded protein response mediates myocardial I/R injury. Administration of PBA reduces the UPR, apoptosis, infarct size, and preserved cardiac function. Hence, PBA may be a therapeutic option to attenuate myocardial I/R injury in clinical practice.


1997 ◽  
Vol 8 (10) ◽  
pp. 1845-1862 ◽  
Author(s):  
Tetsushi Kawahara ◽  
Hideki Yanagi ◽  
Takashi Yura ◽  
Kazutoshi Mori

An intracellular signaling from the endoplasmic reticulum (ER) to the nucleus, called the unfolded protein response (UPR), is activated when unfolded proteins are accumulated in the ER under a variety of stress conditions (“ER stress”). We and others recently identified Hac1p/Ern4p as a transcription factor responsible for the UPR inSaccharomyces cerevisiae. It was further reported that Hac1p (238 aa) is detected only in ER-stressed cells, and its expression is mediated by unconventional splicing ofHAC1 precursor mRNA. The splicing replaces the C-terminal portion of Hac1p; it was proposed that precursor mRNA is also translated but the putative product of 230 aa is rapidly degraded by the ubiquitin–proteasome pathway. We have identified and characterized the same regulated splicing and confirmed its essential features. Contrary to the above proposal, however, we find that the 238-aa product of mature mRNA and the 230-aa-type protein tested are highly unstable with little or no difference in stability. Furthermore, we demonstrate that the absence of Hac1p in unstressed cells is due to the lack of translation of precursor mRNA. We conclude that Hac1p is synthesized as the result of ER stress-induced mRNA splicing, leading to activation of the UPR.


Sign in / Sign up

Export Citation Format

Share Document