scholarly journals Genome Sequence of the Oleaginous Red Yeast Rhodosporidium toruloides MTCC 457

2012 ◽  
Vol 11 (8) ◽  
pp. 1083-1084 ◽  
Author(s):  
Shailesh Kumar ◽  
Hariom Kushwaha ◽  
Anand Kumar Bachhawat ◽  
Gajendra Pal Singh Raghava ◽  
Kaliannan Ganesan
Keyword(s):  
Genome Sequence ◽  
De Novo ◽  
Molecular Genetic ◽  
Draft Genome ◽  
Molecular Genetic Analysis ◽  
Rhodosporidium Toruloides ◽  
Biofuel Production ◽  
Content Type ◽  
Oleaginous Fungi ◽  
Red Yeast

ABSTRACTWe report thede novoassembled 20.05-Mb draft genome of the red yeastRhodosporidium toruloidesMTCC 457, predicted to encode 5,993 proteins, 4 rRNAs, and 125 tRNAs. Proteins known to be unique to oleaginous fungi are present among the predicted proteins. The genome sequence will be valuable for molecular genetic analysis and manipulation of lipid accumulation in this yeast and for developing it as a potential host for biofuel production.

scholarly journals Draft Genome Sequence of a Red Basidiomycete Yeast, Symmetrospora coprosmae Strain UCD350, Isolated from Soil in Ireland

2019 ◽  
Vol 8 (44) ◽  
Author(s):  
Jameela Almasoud ◽  
Laoise McArdle ◽  
Ryan Henne ◽  
Karen Mathews ◽  
Ísla O’Connor ◽  
...  
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Red Yeast

Symmetrospora coprosmae is a red yeast from the subphylum Pucciniomycotina in the phylum Basidiomycota. Here, we present the first genome sequence of S. coprosmae strain UCD350, from an isolate collected from soil in Ireland. The genome size is 20.2 Mb.

scholarly journals Draft Genome Sequence of the Community-Associated Staphylococcus aureus Sequence Type 88 Strain LVP-7, Isolated from an Ocular Infection

2021 ◽  
Vol 10 (7) ◽  
Author(s):  
Savitha Nadig ◽  
Sneha Murthy ◽  
Muralidharan Vandanashree ◽  
Hosahalli S. Subramanya ◽  
Balasubramanian Gopal ◽  
...  
Keyword(s):  
Staphylococcus Aureus ◽  
Genome Sequence ◽  
De Novo ◽  
Draft Genome ◽  
Sequence Type ◽  
Draft Genome Sequence ◽  
Ocular Infection ◽  
Content Type ◽  
Type V ◽  
Panton Valentine Leukocidin

ABSTRACT We report a de novo-assembled draft genome sequence of the Indian Staphylococcus aureus sequence type 88 (ST88) strain LVP-7, isolated from an ocular infection. The genome harbors a Panton-Valentine leukocidin phage, a type V staphylococcal cassette chromosome mec element, the delta-hemolysin-converting Newman phage ΦNM3, and the pathogenicity island SaPI3, encoding the superantigen enterotoxin B.

scholarly journals Draft Genome Sequence of a New Zealand Isolate of Mycoplasma ovipneumoniae

2020 ◽  
Vol 9 (10) ◽  
Author(s):  
B. J. Bridgeman ◽  
S. K. Gupta ◽  
A. Murray ◽  
V. S. R. Dukkipati ◽  
E. Altermann ◽  
...  
Keyword(s):  
New Zealand ◽  
Genome Sequence ◽  
De Novo ◽  
Draft Genome ◽  
Illumina Miseq ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Mycoplasma Ovipneumoniae

The genome of New Zealand Mycoplasma ovipneumoniae isolate 90 was sequenced and assembled using an Illumina MiSeq system and combining the built-in Geneious de novo and Velvet de novo assemblers. The 1,031,345-bp-long genome harbored 711 genes with a coding percentage of 86.6.

scholarly journals Improved De Novo Draft Genome Sequence of the Nocavionin-Producing Type Strain Nocardia terpenica IFM 0706 and Comparative Genomics with the Closely Related Strain Nocardia terpenica IFM 0406

2020 ◽  
Vol 9 (34) ◽  
Author(s):  
Anina Buchmann ◽  
Harald Gross
Keyword(s):  
Comparative Genomics ◽  
Genome Size ◽  
Genome Sequence ◽  
Type Strain ◽  
De Novo ◽  
Draft Genome ◽  
Pathogenic Strain ◽  
Draft Genome Sequence ◽  
Related Strain ◽  
Content Type

ABSTRACT We report an improved de novo draft genome sequence of the human-pathogenic strain Nocardia terpenica IFM 0706T. The resequencing unveiled that the genome size is larger than anticipated, reducing significantly the number of contigs and building a basis for comparison with the closely related strain N. terpenica IFM 0406.

scholarly journals Draft Genome Sequence of the Type Strain Streptomyces armeniacus ATCC 15676

2018 ◽  
Vol 7 (11) ◽  
Author(s):  
Puneet Labana ◽  
Jessica T. Gosse ◽  
Christopher N. Boddy
Keyword(s):  
Secondary Metabolite ◽  
Genome Sequence ◽  
Type Strain ◽  
De Novo ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Significant Source ◽  
Content Type

The Streptomyces genus represents a prolific and significant source for secondary metabolite discovery. Here, we report a de novo assembly and draft genome sequence for the type strain Streptomyces armeniacus ATCC 15676.

scholarly journals Draft Genome Sequence of Escherichia coli KL53

2018 ◽  
Vol 6 (13) ◽  
Author(s):  
Katarina Soltys ◽  
Silvia Vavrova ◽  
Jaroslav Budis ◽  
Lenka Palkova ◽  
Gabriel Minarik ◽  
...  
Keyword(s):  
Escherichia Coli ◽  
Clinical Isolate ◽  
Genome Sequence ◽  
De Novo ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Tellurite Resistance ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes

ABSTRACT Here, we report the draft genome sequence of a clinical isolate of the uropathogenic strain Escherichia coli KL53. A total of 5,083,632 bp was de novo assembled into 170 contigs containing 89 RNAs and 5,034 protein-coding genes. Remarkable is the presence of the tellurite resistance ( ter ) operon on a plasmid.

scholarly journals Draft Genome Sequence of Klebsiella pneumoniae AWD5

2017 ◽  
Vol 5 (5) ◽  
Author(s):  
Jina Rajkumari ◽  
L. Paikhomba Singha ◽  
Piyush Pandey
Keyword(s):  
Klebsiella Pneumoniae ◽  
Genome Sequence ◽  
De Novo ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Rrna Genes ◽  
Polyaromatic Hydrocarbon ◽  
Coding Sequences ◽  
Content Type ◽  
Benzoate Degradation

ABSTRACT Here, we report the draft genome sequence of Klebsiella pneumoniae strain AWD5, isolated from an automobile workshop in India. The de novo assembly resulted in a 4,807,409 bp genome containing 25 rRNA genes, 81 tRNAs, and 4,636 coding sequences (CDS). It carries important genes for polyaromatic hydrocarbon degradation and benzoate degradation.

scholarly journals Draft Genome Sequence of Halotolerant Bacterium Chromohalobacter salexigens ANJ207, Isolated from Salt Crystal Deposits in Pipelines

2019 ◽  
Vol 8 (15) ◽  
Author(s):  
Alok Kumar Srivastava ◽  
Anjney Sharma ◽  
Ruchi Srivastava ◽  
Praveen Kumar Tiwari ◽  
Alok Kumar Singh ◽  
...  
Keyword(s):  
Genome Sequence ◽  
De Novo ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Salt Crystal ◽  
Draft Assembly ◽  
Content Type ◽  
Halotolerant Bacterium ◽  
Nacl Concentration ◽  
Chromohalobacter Salexigens

Chromohalobacter salexigens ANJ207 was isolated from a salt crystal and is known to tolerate up to 30% NaCl concentration. Here, we report the de novo draft assembly of C. salexigens ANJ207.

scholarly journals Draft Genome Sequence of the Multidrug-Resistant Strain Pseudomonas aeruginosa PA291, Isolated from Cystic Fibrosis Sputum

2021 ◽  
Vol 10 (36) ◽  
Author(s):  
Tiffany Luong ◽  
Ashley Schumann ◽  
Douglas Conrad ◽  
Dwayne Roach
Keyword(s):  
Cystic Fibrosis ◽  
Pseudomonas Aeruginosa ◽  
Genome Sequence ◽  
Resistant Strain ◽  
De Novo ◽  
Draft Genome ◽  
Multidrug Resistant ◽  
Content Type ◽  
Cystic Fibrosis Sputum ◽  
Multidrug Resistant Strain

Here, we report the genome sequence of PA291, a nonmucoid, multidrug-resistant strain of Pseudomonas aeruginosa isolated from cystic fibrosis sputum. Short reads were de novo assembled into 190 contigs and scaffold assembled to a length of 6.26 Mbp. PhiSpy predicts that PA291 is free of prophages.

scholarly journals Draft Genome Sequence and Annotation of the Lichen-Forming Fungus Arthonia radiata

2018 ◽  
Vol 6 (14) ◽  
Author(s):  
Ellie E. Armstrong ◽  
Stefan Prost ◽  
Damien Ertz ◽  
Martin Westberg ◽  
Andreas Frisch ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Genome Assembly ◽  
Type Species ◽  
De Novo ◽  
Transcriptome Assembly ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Illumina Hiseq ◽  
Content Type ◽  
Mate Pair

ABSTRACT We report here the draft de novo genome assembly, transcriptome assembly, and annotation of the lichen-forming fungus Arthonia radiata (Pers.) Ach., the type species for Arthoniomycetes, a class of lichen-forming, lichenicolous, and saprobic Ascomycota. The genome was assembled using overlapping paired-end and mate pair libraries and sequenced on an Illumina HiSeq 2500 instrument.

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