scholarly journals Complete Genome Sequences of Chikungunya Viruses Isolated from Plasma Specimens Collected from Haitians in 2014

2017 ◽  
Vol 5 (15) ◽  
Author(s):  
Sarah K. White ◽  
J. Glenn Morris ◽  
Maha A. Elbadry ◽  
Valery Madsen Beau De Rochars ◽  
Bernard A. Okech ◽  
...  

ABSTRACT Ten chikungunya virus isolates from human plasma collected in Haiti from May to August 2014, in the midst of a chikungunya fever outbreak, were fully sequenced. The resulting genomic sequences are nearly identical, and phylogenetic analyses indicate they belong to the Asian lineage of the virus.

2017 ◽  
Vol 5 (27) ◽  
Author(s):  
Wes A. Sanders ◽  
Kristin Long ◽  
Brenda Rivera ◽  
Heather A. Vincent ◽  
Mark T. Heise ◽  
...  

ABSTRACT Here, we report the complete genome sequences of 15 chikungunya virus strains isolated from human plasma from infected patients in Puerto Rico. The results show that currently circulating chikungunya strains in Puerto Rico are closely related.


2016 ◽  
Vol 4 (2) ◽  
Author(s):  
Akira Yusa ◽  
Nozomu Iwabuchi ◽  
Hiroaki Koinuma ◽  
Takuya Keima ◽  
Yutaro Neriya ◽  
...  

Hydrangea ringspot virus (HdRSV) is a plant RNA virus, naturally infecting Hydrangea macrophylla . Here, we report the first genomic sequences of two HdRSV isolates from hydrangea plants in Japan. The overall nucleotide sequences of these Japanese isolates were 96.0 to 96.3% identical to those of known European isolates.


2016 ◽  
Vol 4 (4) ◽  
Author(s):  
Sang-Im Yun ◽  
Byung-Hak Song ◽  
Jordan C. Frank ◽  
Justin G. Julander ◽  
Irina A. Polejaeva ◽  
...  

Here, we report the 10,807-nucleotide-long consensus RNA genome sequences of three spatiotemporally distinct and genetically divergent Zika virus strains, with the functionality of their genomic sequences substantiated by reverse genetics: MR-766 (African lineage, Uganda, 1947), P6-740 (Asian lineage, Malaysia, 1966), and PRVABC-59 (Asian lineage-derived American strain, Puerto Rico, 2015).


2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Jason T. Ladner ◽  
Michael R. Wiley ◽  
Karla Prieto ◽  
Chadwick Y. Yasuda ◽  
Elyse Nagle ◽  
...  

Zika virus is an emerging human pathogen of great concern due to putative links to microcephaly and Guillain-Barre syndrome. Here, we report the complete genomes, including the 5′ and 3′ untranslated regions, of five Zika virus isolates, one from the Asian lineage and four from the African lineage.


2018 ◽  
Vol 6 (26) ◽  
Author(s):  
Xiaomin Zhang ◽  
Yalan Huang ◽  
Miao Wang ◽  
Fan Yang ◽  
Jinquan Cheng ◽  
...  

Here, we isolated two chikungunya virus strains (SZ1050 and SZ1239) from patients infected with chikungunya virus who were returning to China from India and Indonesia, respectively. Strain SZ1050 was classed in the Indian Ocean lineage, and strain SZ1239 belonged to the Asian lineage.


2019 ◽  
Vol 165 (2) ◽  
pp. 445-450 ◽  
Author(s):  
Jira Chansaenroj ◽  
Nasamon Wanlapakorn ◽  
Chokchai Ngamsaithong ◽  
Thanunrat Thongmee ◽  
Natthaphon Na nakorn ◽  
...  

2013 ◽  
Vol 1 (3) ◽  
Author(s):  
Y. Qin ◽  
Z. Zhang ◽  
Q. Qiao ◽  
D. Zhang ◽  
Y. Tian ◽  
...  

2009 ◽  
Vol 83 (7) ◽  
pp. 2917-2929 ◽  
Author(s):  
Jelle Matthijnssens ◽  
Christiaan A. Potgieter ◽  
Max Ciarlet ◽  
Viviana Parreño ◽  
Vito Martella ◽  
...  

ABSTRACT A limited number of human G6P[14] rotavirus strains that cause gastroenteritis in humans have been isolated in Europe and Australia. The complete genome sequences were determined for five of these human strains—B10925-97 (isolated in Belgium in 1997), 111/05-27 (Italy, 2005), PA169 (Italy, 1987), MG6 (Australia, 1993), and Hun5 (Hungary, 1997)—and their genetic relatedness to animal rotavirus strains was evaluated by sequencing the complete genome of the sheep rotavirus OVR762 (G8P[14]; Spain, 2002), the guanaco (Lama guanicoe) rotavirus strains Arg/Chubut/99 and Arg/Río Negro/98 (G8P[14] and G8P[1], respectively; Argentina, 1999 and 1998), the sable antelope strain RC-18/08 (G6P[14]; South Africa, 2008), and the bovine rotavirus strain Arg/B383/98 (G15P[11]; Argentina, 1998). These analyses revealed an overall consensus genomic constellation (G6/G8)-P[14]-I2-(R2/R5)-C2-M2-(A3/A11)-N2-T6-(E2/E12)-H3, together with a few gene reassortments, and the phylogenetic analyses confirmed that the P[14] human strains evaluated in this study were closely related to rotavirus strains isolated from sheep, cattle, goats, guanacos, and antelopes and to rabbits (albeit to a lesser extent), suggesting that one (or more) of these animal species might be the source of the human G6P[14] strains. The main feature of the genotype and phylogenetic analyses was the close overall genomic relatedness between the five human G6P[14] rotavirus strains and the ovine and antelope rotavirus strains. Taken together, these data strongly suggest a common origin for the human P[14] strains and those of the even-toed ungulates belonging to the mammalian order Artiodactyla, with sheep probably playing a key role in the interspecies transmission responsible for the introduction of P[14] rotavirus strains into the human population.


2017 ◽  
Vol 5 (46) ◽  
Author(s):  
Graham Rose ◽  
Kyriaki Ranellou ◽  
Raju Misra ◽  
Colin Crump ◽  
David Wooldridge ◽  
...  

ABSTRACT BK polyomavirus is an important pathogen in kidney transplant patients. We report here two complete genome sequences, those of isolates CAMB-1035 and CAMB-1055, identified in two urine samples tested for urinary tract infection at a hospital in eastern England, United Kingdom. Variation and phylogenetic analyses indicate that both isolates belong to subtype Ib-1.


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