scholarly journals Genome Sequence of the Fish Pathogen Flavobacterium columnare ATCC 49512

2012 ◽  
Vol 194 (10) ◽  
pp. 2763-2764 ◽  
Author(s):  
H. C. Tekedar ◽  
A. Karsi ◽  
A. F. Gillaspy ◽  
D. W. Dyer ◽  
N. R. Benton ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Flavobacterium Columnare ◽  
Fish Pathogen

scholarly journals Complete Genome Sequence of Fish Pathogen Flavobacterium columnare Strain B185, Originating from Finland

2019 ◽  
Vol 8 (49) ◽  
Author(s):  
Janne J. Ravantti ◽  
Elina Laanto ◽  
Petri Papponen ◽  
Lotta-Riina Sundberg
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Flavobacterium Columnare ◽  
Fish Pathogen ◽  
Sequencing Technology ◽  
Content Type ◽  
Pacbio Rs Ii ◽  
Circular Genome

We report a complete genome sequence of a Finnish isolate of the fish pathogen Flavobacterium columnare. Using PacBio RS II sequencing technology, the complete circular genome of F. columnare strain B185 with 3,261,404 bp was obtained.

scholarly journals Draft Genome Sequence of the Fish Pathogen Flavobacterium columnare Genomovar III Strain PH-97028 (=CIP 109753)

2018 ◽  
Vol 6 (14) ◽  
Author(s):  
Alexis Criscuolo ◽  
Olivier Chesneau ◽  
Dominique Clermont ◽  
Chantal Bizet
Keyword(s):  
Genome Sequence ◽  
Reference Strain ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Flavobacterium Columnare ◽  
Fish Pathogen ◽  
Content Type

ABSTRACT Flavobacterium columnare strain PH-97028 (=CIP 109753) is a genomovar III reference strain that was isolated from a diseased Ayu fish in Japan. We report here the analysis of the first available genomovar III sequence of this species to aid in identification, epidemiological tracking, and virulence studies.

scholarly journals Genome Sequence of the Fish Pathogen Flavobacterium columnare Genomovar II Strain 94-081

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Salih Kumru ◽  
Hasan C. Tekedar ◽  
Geoffrey C. Waldbieser ◽  
Attila Karsi ◽  
Mark L. Lawrence
Keyword(s):  
Genome Sequence ◽  
Channel Catfish ◽  
Brackish Water ◽  
Flavobacterium Columnare ◽  
Fish Pathogen ◽  
Columnaris Disease

Flavobacterium columnare causes columnaris disease in fresh and brackish water worldwide. F. columnare strain 94-081 was isolated from a diseased channel catfish in 1994; its genome sequence is the first completed genomovar II sequence.

scholarly journals Draft Genome Sequence of the Fish Pathogen Flavobacterium columnare Strain CSF-298-10

2017 ◽  
Vol 5 (15) ◽  
Author(s):  
Jason P. Evenhuis ◽  
Scott E. LaPatra ◽  
Joerg Graf
Keyword(s):  
Genome Sequence ◽  
Genome Assembly ◽  
Complete Genome ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Flavobacterium Columnare ◽  
Fish Pathogen ◽  
Content Type ◽  
Draft Genome Assembly ◽  
Columnaris Disease

ABSTRACT We announce here the draft genome assembly of Flavobacterium columnare CSF-298-10, a strain isolated from an outbreak of columnaris disease at a commercial trout farm in Hagerman Valley, Idaho, USA. The complete genome consists of 13 contigs totaling 3,284,579 bp, with an average G+C content of 31.5% and 2,933 predicted coding genes.

scholarly journals Rich resource environment of fish farms facilitates phenotypic variation and virulence in an opportunistic fish pathogen

2020 ◽  
Author(s):  
Katja Pulkkinen ◽  
Tarmo Ketola ◽  
Jouni Laakso ◽  
Johanna Mappes ◽  
Lotta-Riina Sundberg
Keyword(s):  
Growth Rate ◽  
Natural Water ◽  
Phenotypic Variation ◽  
Water Environment ◽  
High Growth ◽  
Flavobacterium Columnare ◽  
Bacterial Survival ◽  
Fish Pathogen ◽  
Fish Farms ◽  
Host Environment

SummaryPhenotypic variation allows adaptation of opportunistic pathogens to variable conditions in the outside-host environment with strong effects on their epidemiology and pathogenicity in hosts. Here we found that the isolates of an opportunistic fish pathogen Flavobacterium columnare from fish farming environment had higher phenotypic variation between two morphotypes in growth, as compared to the isolates from the natural water environment. The rough morphotypes had higher growth rate than the rhizoid morphotypes especially in the higher resource concentrations and in the higher temperature, but only if the isolate was originating from the fish farms. Rhizoid morphotype was more virulent than the rough type regardless of their origin. However, the virulence of the rough type increased sharply with the size of the fish, and the bacterial isolates from the gills of diseased fish were rhizoid type, indicating a reversal of the rough morphotype into rhizoid in contact with the fish. The high growth rate of the rough morphotype combined with the morphotype reversibility could increase the probability of columnaris epidemics at fish farms. Our findings suggest that intensive farming imposes different selection pressures on bacterial survival in the outside-host environment and its transmission compared to the natural water environment.

scholarly journals The Complete Genome Sequence of the Fish Pathogen Tenacibaculum maritimum Provides Insights into Virulence Mechanisms

2017 ◽  
Vol 8 ◽  
Author(s):  
David Pérez-Pascual ◽  
Aurelie Lunazzi ◽  
Ghislaine Magdelenat ◽  
Zoe Rouy ◽  
Alain Roulet ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Fish Pathogen

scholarly journals Complete Genome Sequence of Sponge-Associated Tenacibaculum mesophilum DSM 13764T

2019 ◽  
Vol 8 (48) ◽  
Author(s):  
Sou Miyake ◽  
Melissa Soh ◽  
Yichen Ding ◽  
Henning Seedorf
Keyword(s):  
Comparative Genomics ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Disease Outbreaks ◽  
Close Relative ◽  
Fish Disease ◽  
Fish Pathogen ◽  
Content Type ◽  
Aquaculture Facilities

Here, the complete genome sequence of sponge-associated Tenacibaculum mesophilum DSM 13764T is presented. T. mesophilum is a close relative of the fish pathogen T. maritimum, which causes significant fish disease outbreaks in aquaculture facilities. The T. mesophilum genome sequence will serve as an important resource for comparative genomics approaches.

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