scholarly journals Draft Genome Sequences of Pseudomonas syringae pv. tomato Strains J4 and J6, Isolated in Florida

2021 ◽  
Vol 10 (15) ◽  
Author(s):  
Naweena Thapa ◽  
Sujan Timilsina ◽  
Gerald V. Minsavage ◽  
Juliana Pereira-Martin ◽  
Gary E. Vallad ◽  
...  
Keyword(s):  
Pseudomonas Syringae ◽  
Draft Genome ◽  
Nucleotide Identity ◽  
Average Nucleotide Identity ◽  
Genome Sequences ◽  
Content Type ◽  
Bacterial Speck

ABSTRACT Pseudomonas syringae pv. tomato causes bacterial speck in tomato. We report the genome sequences of two P. syringae pv. tomato strains, J4 and J6, that are genetically closely related, with >99.9 average nucleotide identity (ANI), but vary in the presence of coronatine-associated genes.

scholarly journals Draft Genome Sequences of Thiorhodococcus mannitoliphagus and Thiorhodococcus minor, Purple Sulfur Photosynthetic Bacteria in the Gammaproteobacterial Family Chromatiaceae

2020 ◽  
Vol 9 (14) ◽  
Author(s):  
Fabiola A. Aviles ◽  
Terry E. Meyer ◽  
John A. Kyndt
Keyword(s):  
Photosynthetic Bacteria ◽  
Draft Genome ◽  
Nucleotide Identity ◽  
Whole Genome ◽  
Average Nucleotide Identity ◽  
Genome Sequences ◽  
Content Type

We have determined the draft genome sequences of Thiorhodococcus mannitoliphagus and Thiorhodococcus minor for comparison with those of T. drewsii and Imhoffiella purpurea. According to average nucleotide identity (ANI) and whole-genome phylogenetic comparisons, these two species are clearly distinct from the Imhoffiella species and T. drewsii.

scholarly journals Draft Genome Sequences of Plant-Pathogenic Klebsiella variicola Strains Isolated from Plantain in Haiti

2020 ◽  
Vol 9 (29) ◽  
Author(s):  
James C. Fulton ◽  
Jeannie M. Klein ◽  
Sladana Bec ◽  
Joubert Fayette ◽  
Karen A. Garrett ◽  
...  
Keyword(s):  
Type Strain ◽  
Draft Genome ◽  
Nucleotide Identity ◽  
Average Nucleotide Identity ◽  
Genome Sequences ◽  
Content Type

ABSTRACT The genus Klebsiella includes pathogenic and nonpathogenic species. We report the 5.57-Mb genome sequences of two Klebsiella variicola strains, G18-1365 and G18-1376, isolated from symptomatic plantain plants in Haiti. These strains are genetically closely related (average nucleotide identity [ANI] > 99%) to the previously described type strain of K. variicola, DSM 15968.

scholarly journals Complete and Draft Genome Sequences of the Cruciferous Pathogens Pseudomonas cannabina pv. alisalensis and Pseudomonas syringae pv. maculicola

2021 ◽  
Vol 10 (17) ◽  
Author(s):  
Takashi Fujikawa ◽  
Yuichi Takikawa ◽  
Yasuhiro Inoue
Keyword(s):  
Pseudomonas Syringae ◽  
Leaf Spot ◽  
Draft Genome ◽  
Leaf Blight ◽  
Bacterial Leaf Blight ◽  
Genome Sequences ◽  
Bacterial Leaf Spot ◽  
Content Type

ABSTRACT Pseudomonas cannabina pv. alisalensis and Pseudomonas syringae pv. maculicola cause bacterial leaf blight and bacterial leaf spot of crucifers (Brassicaceae). Both pathogens are threats to the cultivation of cruciferous crops. Here, we sequenced two strains of each pathogen, which will contribute to the development of countermeasures for the above diseases.

scholarly journals Genome Sequences of Two Choline-Utilizing Methanogenic Archaea, Methanococcoides spp., Isolated from Marine Sediments

2019 ◽  
Vol 8 (18) ◽  
Author(s):  
Gordon Webster ◽  
Alex J. Mullins ◽  
Andrew J. Watkins ◽  
Edward Cunningham-Oakes ◽  
Andrew J. Weightman ◽  
...  
Keyword(s):  
Marine Sediments ◽  
Dna Hybridization ◽  
In Silico ◽  
Methanogenic Archaea ◽  
Nucleotide Identity ◽  
Average Nucleotide Identity ◽  
Genome Sequences ◽  
Content Type

The genomes of two Methanococcoides spp. that were isolated from marine sediments and are capable of carrying out methanogenesis from choline and other methylotrophic substrates were sequenced. The average nucleotide identity and in silico DNA-DNA hybridization analyses demonstrate that they represent species different from those previously described.

scholarly journals Draft Genome Sequence of Bacillus albus Strain IB84, Isolated from Mexican Soil

2021 ◽  
Vol 10 (17) ◽  
Author(s):  
Jorge H. García-García ◽  
Carlos J. Moreno-Peña ◽  
Cesar I. Hernández-Vásquez ◽  
Luis J. Galán-Wong ◽  
Benito Pereyra-Alférez
Keyword(s):  
New Species ◽  
Bacillus Thuringiensis ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Nucleotide Identity ◽  
Average Nucleotide Identity ◽  
Gene Sequences ◽  
Content Type ◽  
A New Species

ABSTRACT Bacillus albus is a new species, but it lies on the borderline with Bacillus thuringiensis. In this work, we report a strain previously identified as Bacillus thuringiensis IB84, which now, based on average nucleotide identity and rRNA 16S, gyrB, groEL, and xre gene sequences, must be identified as Bacillus albus.

scholarly journals Genome Sequences of Five Streptomyces Bacteriophages Forming Cluster BG

2017 ◽  
Vol 5 (28) ◽  
Author(s):  
Richard Donegan-Quick ◽  
Zane A. Gibbs ◽  
Patricia O. Amaku ◽  
Joshua T. Bernal ◽  
Dana A. M. Boyd ◽  
...  
Keyword(s):  
Streptomyces Griseus ◽  
The Other ◽  
Nucleotide Identity ◽  
Strain Atcc ◽  
Average Nucleotide Identity ◽  
Genome Sequences ◽  
Content Type

ABSTRACT Cluster BG of the actinobacteriophage was formed upon discovery of five novel bacteriophages isolated by enrichment from their host, Streptomyces griseus subsp. griseus strain ATCC 10137. Four members of this cluster (BabyGotBac, Maih, TP1605, and YDN12) share over 89% average nucleotide identity, while the other (Xkcd426) has only 72% similarity to other cluster members.

scholarly journals Draft Genome Sequences of Bifidobacterium Strains N4G05 and N5G01, Isolated from the Human Vaginal Microbiome

2018 ◽  
Vol 6 (2) ◽  
Author(s):  
Aline C. Freitas ◽  
Janet E. Hill
Keyword(s):  
De Novo ◽  
Draft Genome ◽  
Nucleotide Identity ◽  
Vaginal Microbiome ◽  
Average Nucleotide Identity ◽  
Genome Sequences ◽  
High Quality

ABSTRACT We report here the draft genome sequences of Bifidobacterium strains N4G05 and N5G01, isolated from the human vaginal microbiome. Genome sequences were obtained by de novo assembly from high-quality reads. Both strains were closely related to Bifidobacterium kashiwanohense based on barcode marker sequences and average nucleotide identity analysis.

scholarly journals Draft Genome Sequences of the Three Massilia Strains AB1, ST3, and ZL223

2021 ◽  
Vol 10 (30) ◽  
Author(s):  
Ariel A. Bradley ◽  
Zoephia Laughlin ◽  
Saralexis Torres ◽  
Loralyn M. Cozy
Keyword(s):  
Draft Genome ◽  
Genomic Data ◽  
Gene Clusters ◽  
Nucleotide Identity ◽  
Average Nucleotide Identity ◽  
Biosynthetic Gene ◽  
Genome Sequences ◽  
Biosynthetic Gene Clusters ◽  
Antibiotic Discovery

To increase the genomic data available for antibiotic discovery, three independently isolated antibiotic-producing Massilia strains were sequenced. No more than 84% average nucleotide identity was shared with publicly available Massilia genomes, and a low similarity of predicted biosynthetic gene clusters to known clusters was found.

scholarly journals Draft Genome Sequences of 10 Strains of Pseudomonas syringae pv. actinidiae Biovar 1, a Major Kiwifruit Bacterial Canker Pathogen in Japan

2020 ◽  
Vol 9 (35) ◽  
Author(s):  
Takashi Fujikawa ◽  
Hiroe Hatomi ◽  
Hiroyuki Sawada
Keyword(s):  
Pseudomonas Syringae ◽  
Draft Genome ◽  
Major Group ◽  
Bacterial Canker ◽  
Genome Sequences ◽  
Content Type ◽  
Canker Pathogen

ABSTRACT Several groups (biovars) of the kiwifruit bacterial canker pathogen Pseudomonas syringae pv. actinidiae are found in Japan. Here, we sequenced and compared 10 genome sequences of biovar 1, a major group in Japan, which is known as the phaseolotoxin producer.

scholarly journals Draft Genome Sequences of Three Fusarium circinatum Isolates Used To Inoculate a Pedigreed Population of Pinus elliottii Seedlings

2020 ◽  
Vol 9 (30) ◽  
Author(s):  
James C. Fulton ◽  
Jose C. Huguet-Tapia ◽  
Stephanie M. Adams ◽  
Nicholas S. Dufault ◽  
Tania Quesada ◽  
...  
Keyword(s):  
North Carolina ◽  
Draft Genome ◽  
Pinus Elliottii ◽  
Forest Service ◽  
Average Nucleotide Identity ◽  
Fusarium Circinatum ◽  
Resistance Screening ◽  
Genome Sequences ◽  
Content Type ◽  
The U.S

ABSTRACT Here, we announce the draft genome sequences of three Fusarium circinatum isolates that were used to inoculate slash pines (Pinus elliottii) at the U.S. Forest Service Resistance Screening Center in Asheville, North Carolina. The genomes of these isolates were similar to other publicly available genomes, with average nucleotide identity values of >0.98.

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