scholarly journals Draft Genome Sequence of Shewanella sp. Strain T2.3D-1.1, Isolated from 121.8 Meters Deep in the Subsurface of the Iberian Pyrite Belt

2020 ◽  
Vol 9 (40) ◽  
Author(s):  
Sofia de Francisco-Polanco ◽  
José M. Martínez ◽  
Tania Leandro ◽  
Ricardo Amils
Keyword(s):  
Genome Sequence ◽  
Dna Sequences ◽  
Draft Genome ◽  
Iberian Pyrite Belt ◽  
Rrna Operon ◽  
Draft Genome Sequence ◽  
Trna Genes ◽  
Deep Subsurface

ABSTRACT Shewanella sp. strain T2.3D-1.1 was isolated from the deep subsurface of the Iberian Pyrite Belt. We report its draft genome sequence, consisting of 49 scaffolds, with a chromosome of ≈4.6 Mb and a 23.8-kb plasmid. The chromosome annotation identified 4,068 coding DNA sequences, 1 rRNA operon, and 108 tRNA genes.

scholarly journals Draft Genome Sequence of the Deep-Subsurface Actinobacterium Tessaracoccus lapidicaptus IPBSL-7 T

2016 ◽  
Vol 4 (5) ◽  
Author(s):  
Fernando Puente-Sánchez ◽  
Dietmar H. Pieper ◽  
Alejandro Arce-Rodríguez
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Dna Sequences ◽  
Type Strain ◽  
Draft Genome ◽  
Iberian Pyrite Belt ◽  
Draft Genome Sequence ◽  
Rrna Genes ◽  
Trna Genes ◽  
Deep Subsurface

The type strain of Tessaracoccus lapidicaptus was isolated from the deep subsurface of the Iberian Pyrite Belt (southwest Spain). Here, we report its draft genome, consisting of 27 contigs with a ~3.1-Mb genome size. The annotation revealed 2,905 coding DNA sequences, 45 tRNA genes, and three rRNA genes.

scholarly journals Draft Genome Sequence of Pseudomonas sp. Strain T2.31D-1, Isolated from a Drilling Core Sample Obtained 414 Meters below Surface in the Iberian Pyrite Belt

2021 ◽  
Vol 10 (1) ◽  
Author(s):  
J. M. Martínez ◽  
C. Escudero ◽  
T. Leandro ◽  
G. Mateos ◽  
R. Amils
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Iberian Pyrite Belt ◽  
Core Sample ◽  
Rrna Operon ◽  
Draft Genome Sequence ◽  
Trna Genes ◽  
Pseudomonas Sp ◽  
Coding Sequences ◽  
Drilling Core

ABSTRACT We report the draft genome of Pseudomonas sp. strain T2.31D-1, which was isolated from a drilling core sample obtained 414 m below surface in the Iberian Pyrite Belt. The genome consists of a 4.7-Mb chromosome with 4,428 coding sequences, 1 rRNA operon, 59 tRNA genes, and a 31.8-kb plasmid.

scholarly journals Draft Genome Sequence of Rhodoplanes sp. Strain T2.26MG-98, Isolated from 492.6 Meters Deep on the Subsurface of the Iberian Pyrite Belt

2019 ◽  
Vol 8 (16) ◽  
Author(s):  
N. Mariñán ◽  
José M. Martínez ◽  
T. Leandro ◽  
R. Amils
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Iberian Pyrite Belt ◽  
Draft Genome Sequence ◽  
Deep Subsurface

Rhodoplanes sp. strain T2.26MG-98 was isolated from the deep subsurface of the Iberian Pyrite Belt. We report its draft genome, consisting of 214 contigs with a chromosome of ∼5.6 Mb and a 53.7-kb plasmid.

scholarly journals Draft Genome Sequence of the Extremely Desiccation-Tolerant Cyanobacterium Gloeocapsopsis sp. Strain AAB1

2018 ◽  
Vol 6 (17) ◽  
Author(s):  
Fernando Puente-Sánchez ◽  
Carlos González-Silva ◽  
Victor Parro ◽  
Javier Tamames ◽  
Armando Azua-Bustos
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Dna Sequences ◽  
Draft Genome ◽  
Atacama Desert ◽  
Draft Genome Sequence ◽  
Rrna Genes ◽  
Trna Genes ◽  
Content Type

ABSTRACT Gloeocapsopsis sp. strain AAB1 is an extremely desiccation-tolerant cyanobacterium isolated from translucent quartz stones from the Atacama Desert (Chile). Here, we report its draft genome sequence, which consists of 137 contigs with an ∼5.4-Mb genome size. The annotation revealed 5,641 coding DNA sequences, 38 tRNA genes, and 5 rRNA genes.

scholarly journals Draft Genome Sequence of Brevundimonas sp. Strain T2.26MG-97, Isolated from a Rock Core Sample from 492.6 Meters Deep on the Subsurface of the Iberian Pyrite Belt

2019 ◽  
Vol 8 (32) ◽  
Author(s):  
E. Rodríguez-Robles ◽  
J. M. Martínez ◽  
T. Leandro ◽  
R. Amils
Keyword(s):  
Genome Sequence ◽  
Dna Sequences ◽  
Draft Genome ◽  
Iberian Pyrite Belt ◽  
Core Sample ◽  
Draft Genome Sequence ◽  
Genome Length

The draft genome of Brevundimonas sp. strain T2.26MG-97, isolated at a depth of 492.6 m in the subsurface of the Iberian Pyrite Belt, is reported here. It consists of 262 scaffolds with a total genome length of 3.68 Mbp, where 3,549 coding DNA sequences have been annotated.

scholarly journals Draft Genome Sequence of Microbacterium oleivorans Strain A9, a Bacterium Isolated from Chernobyl Radionuclide-Contaminated Soil

2017 ◽  
Vol 5 (14) ◽  
Author(s):  
Philippe Ortet ◽  
Nicolas Gallois ◽  
Laurie Piette ◽  
Justine Long ◽  
Catherine Berthomieu ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Dna Sequences ◽  
Contaminated Soil ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Rrna Genes ◽  
Trna Genes ◽  
Exclusion Zone ◽  
Content Type

ABSTRACT Here, we present the draft genome sequence of Microbacterium oleivorans strain A9, a uranium-tolerant actinobacterium which has been isolated from radionuclide-contaminated soil from the Chernobyl exclusion zone. It is composed of 22 contigs totaling 2,954,335 bp and contains 2,813 coding DNA sequences, one cluster of rRNA genes, and 45 tRNA genes.

scholarly journals Draft Genome Sequence of Rhizobium sp. Strain T2.30D-1.1, Isolated from 538.5 Meters Deep on the Subsurface of the Iberian Pyrite Belt

2018 ◽  
Vol 7 (16) ◽  
Author(s):  
R. García ◽  
José M. Martínez ◽  
T. Leandro ◽  
R. Amils
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Iberian Pyrite Belt ◽  
Draft Genome Sequence ◽  
Deep Subsurface ◽  
Rhizobium Sp

Rhizobium sp. strain T2.30D-1.1 was isolated from the deep subsurface of the Iberian Pyrite Belt.

scholarly journals Draft Genome Sequence of Tepidibacillus decaturensis Strain Z9, an Anaerobic, Moderately Thermophilic, and Heterotrophic Bacterium from the Deep Subsurface of the Illinois Basin, USA

2016 ◽  
Vol 4 (2) ◽  
Author(s):  
Yiran Dong ◽  
Yun-Juan Chang ◽  
Robert A. Sanford ◽  
Bruce W. Fouke
Keyword(s):  
Genome Sequence ◽  
Heterotrophic Bacterium ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Illinois Basin ◽  
Trna Genes ◽  
Deep Subsurface ◽  
Protein Coding ◽  
Moderately Thermophilic ◽  
Protein Coding Genes

The genome of the moderately thermophilic and halotolerant bacterium Tepidibacillus decaturensis strain Z9 was sequenced. The draft genome comprises three scaffolds, for a total of 2.95 Mb. As the first sequenced genome within the genus Tepidibacillus , 2,895 protein-coding genes, 52 tRNA genes, and 3 rRNA operons were predicted.

scholarly journals Draft Genome Sequence of Pediatric Otitis Media Isolate Streptococcus pneumoniae Strain EF3030, Which Forms In Vitro Biofilms That Closely Mimic In Vivo Biofilms

2019 ◽  
Vol 8 (2) ◽  
Author(s):  
Edgar J. Scott ◽  
Nicole R. Luke-Marshall ◽  
Anthony A. Campagnari ◽  
David W. Dyer
Keyword(s):  
Streptococcus Pneumoniae ◽  
Otitis Media ◽  
Genome Sequence ◽  
Dna Sequences ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Draft Assembly ◽  
Content Type

Here, we report the draft genome sequence of Streptococcus pneumoniae EF3030, a pediatric otitis media isolate active in biofilm assays of epithelial colonization. The final draft assembly included 2,209,198 bp; the annotation predicted 2,120 coding DNA sequences (CDSs), 4 complete rRNA operons, 58 tRNAs, 3 noncoding RNAs (ncRNAs), and 199 pseudogenes.

scholarly journals Draft Genome Sequence of Limisphaera ngatamarikiensis NGM72.4T, a Moderately Alkaliphilic Thermophile Belonging to the Class Verrucomicrobiae

2020 ◽  
Vol 9 (18) ◽  
Author(s):  
Carlo R. Carere ◽  
Jason A. Steen ◽  
Philip Hugenholtz ◽  
Matthew B. Stott
Keyword(s):  
New Zealand ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Rrna Genes ◽  
Trna Genes ◽  
Illumina Hiseq ◽  
Coding Sequences ◽  
Content Type ◽  
Aotearoa New Zealand

Limisphaera ngatamarikiensis NGM72.4T is a thermophilic representative of the class Verrucomicrobiae. Isolated from geothermally heated subaqueous clay sediments from a Ngatamariki hotspring in Aotearoa New Zealand, the 3,908,748-bp genome was sequenced using the Illumina HiSeq 2500 platform. Annotation revealed 3,083 coding sequences, including 3,031 proteins, 3 rRNA genes, and 46 tRNA genes.

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