scholarly journals Draft Genome Sequence of Pediatric Otitis Media Isolate Streptococcus pneumoniae Strain EF3030, Which Forms In Vitro Biofilms That Closely Mimic In Vivo Biofilms

2019 ◽  
Vol 8 (2) ◽  
Author(s):  
Edgar J. Scott ◽  
Nicole R. Luke-Marshall ◽  
Anthony A. Campagnari ◽  
David W. Dyer
Keyword(s):  
Streptococcus Pneumoniae ◽  
Otitis Media ◽  
Genome Sequence ◽  
Dna Sequences ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Draft Assembly ◽  
Content Type

Here, we report the draft genome sequence of Streptococcus pneumoniae EF3030, a pediatric otitis media isolate active in biofilm assays of epithelial colonization. The final draft assembly included 2,209,198 bp; the annotation predicted 2,120 coding DNA sequences (CDSs), 4 complete rRNA operons, 58 tRNAs, 3 noncoding RNAs (ncRNAs), and 199 pseudogenes.

scholarly journals Draft Genome Sequence of Pseudomonas aeruginosa ATCC 9027, Originally Isolated from an Outer Ear Infection

2017 ◽  
Vol 5 (48) ◽  
Author(s):  
Ambikesh Jayal ◽  
Benjamin E. Johns ◽  
Kevin J. Purdy ◽  
Sarah E. Maddocks
Keyword(s):  
Pseudomonas Aeruginosa ◽  
Genome Sequence ◽  
Otitis Externa ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Control Strain ◽  
Content Type ◽  
Antibiofilm Agents ◽  
Quality Control Strain

ABSTRACT Pseudomonas aeruginosa ATCC 9027 was isolated in 1943 from a case of otitis externa and is commonly employed as a quality control strain for sterility, assessment of antibiofilm agents, and in vitro study of wound infection. Here, we present the 6.34-Mb draft genome sequence and highlight some pertinent genes that are associated with virulence.

scholarly journals Draft Genome Sequence of the Extremely Desiccation-Tolerant Cyanobacterium Gloeocapsopsis sp. Strain AAB1

2018 ◽  
Vol 6 (17) ◽  
Author(s):  
Fernando Puente-Sánchez ◽  
Carlos González-Silva ◽  
Victor Parro ◽  
Javier Tamames ◽  
Armando Azua-Bustos
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Dna Sequences ◽  
Draft Genome ◽  
Atacama Desert ◽  
Draft Genome Sequence ◽  
Rrna Genes ◽  
Trna Genes ◽  
Content Type

ABSTRACT Gloeocapsopsis sp. strain AAB1 is an extremely desiccation-tolerant cyanobacterium isolated from translucent quartz stones from the Atacama Desert (Chile). Here, we report its draft genome sequence, which consists of 137 contigs with an ∼5.4-Mb genome size. The annotation revealed 5,641 coding DNA sequences, 38 tRNA genes, and 5 rRNA genes.

scholarly journals Draft Genome Sequence of Lactiplantibacillus pentosus AWA1501, Isolated from Awa-bancha

2021 ◽  
Vol 10 (30) ◽  
Author(s):  
F. Ito ◽  
R. Niwa ◽  
Y. Syaputri ◽  
Y. Ikagawa ◽  
T. Mizuno ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Dna Sequences ◽  
Fermentation Process ◽  
Anaerobic Fermentation ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Content Type

Lactiplantibacillus pentosus AWA1501 was isolated from the traditional Japanese tea Awa-bancha. Previous studies have reported that this species becomes predominant after the anaerobic fermentation process. In this study, we report the whole-genome sequence of this strain. The draft genome sequence comprises 3,714,221 nucleotides and 3,374 coding DNA sequences, with an average G+C content of 46.02%.

scholarly journals Draft Genome Sequence of the Feruloyl Esterase-Producing Strain Lactobacillus fermentum CRL1446, a Probiotic for Malnutrition

2018 ◽  
Vol 6 (21) ◽  
Author(s):  
María C. Abeijón Mukdsi ◽  
Lucila Saavedra ◽  
María P. Gauffin Cano ◽  
Elvira M. Hebert ◽  
Roxana B. Medina
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Lactobacillus Fermentum ◽  
Feruloyl Esterase ◽  
Draft Genome Sequence ◽  
Probiotic Properties ◽  
Content Type ◽  
Beneficial Effects ◽  
Interesting Candidate

ABSTRACT We report here the draft genome sequence of Lactobacillus fermentum CRL1446 (2,148,781 bp, 51.4% G+C content). This strain exhibits feruloyl esterase activity and important technological and probiotic properties. Because of its proven beneficial effects in vivo, it represents an interesting candidate for the development of functional foods or pharmabiotics for malnutrition.

scholarly journals High-Quality Draft Genome Sequence of Lactobacillus casei Strain Z11, Isolated from a Human Adult Intestinal Biopsy Sample

2017 ◽  
Vol 5 (28) ◽  
Author(s):  
Martín S. Marcial-Coba ◽  
Ian P. G. Marshall ◽  
Lars Schreiber ◽  
Dennis S. Nielsen
Keyword(s):  
Genome Sequence ◽  
Lactobacillus Casei ◽  
Draft Genome ◽  
Human Colon ◽  
Biopsy Sample ◽  
Draft Genome Sequence ◽  
Intestinal Biopsy ◽  
High Quality ◽  
Content Type

ABSTRACT Several Lactobacillus casei strains are used as probiotics. L. casei strain Z11, isolated from a human colon biopsy sample, has been suggested as a probiotic candidate based on promising properties in vitro. Here, we present a 2.74-Mbp high-quality draft genome sequence for this strain.

scholarly journals Draft Genome Sequence of Lactobacillus reuteri CECT8605

2017 ◽  
Vol 5 (18) ◽  
Author(s):  
Ana I. Sañudo ◽  
Mónica M. Olivares ◽  
Oscar Bañuelos
Keyword(s):  
Genome Sequence ◽  
Genetic Stability ◽  
Lactobacillus Reuteri ◽  
Draft Genome ◽  
Human Consumption ◽  
Probiotic Properties ◽  
Content Type ◽  
General Aspects

ABSTRACT Lactobacillus reuteri CECT8605 has shown potential probiotic properties in both in vitro and in vivo assays. Besides its beneficial characteristics, general aspects concerning genetic stability and safety for human consumption have been studied. Its genome sequence has been a useful tool to support preliminary conclusions based on empirical observations.

scholarly journals Draft Genome Sequence of Lactobacillus plantarum IYO1511, Isolated from Ishizuchi-Kurocha

2020 ◽  
Vol 9 (18) ◽  
Author(s):  
Ryo Niwa ◽  
Yolani Syaputri ◽  
Masanori Horie ◽  
Hitoshi Iwahashi
Keyword(s):  
Lactobacillus Plantarum ◽  
Genome Sequence ◽  
Dna Sequences ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Content Type ◽  
Predominant Species

Lactobacillus plantarum IYO1511, isolated from a traditional postfermented tea, is a predominant species associated with Ishizuchi-kurocha. Here, we report the whole-genome sequence of this bacterium. The draft genome comprises 3,229,083 nucleotides and 3,044 coding DNA sequences (CDSs), with an average G+C content of 44.5%.

scholarly journals Draft Genome Sequence of Paenibacillus polymyxa 3A-25AI, a Strain Antagonist to Root Rot Causal Phytopathogens

2020 ◽  
Vol 9 (7) ◽  
Author(s):  
Jazmín López-Martínez ◽  
Yumiko De La Cruz-Rodríguez ◽  
Alejandro Alvarado-Gutiérrez ◽  
Miguel Alvarado-Rodríguez ◽  
Julio Vega-Arreguín ◽  
...  
Keyword(s):  
Rhizoctonia Solani ◽  
Genome Size ◽  
Genome Sequence ◽  
Dna Sequences ◽  
Root Rot ◽  
Phytophthora Capsici ◽  
Draft Genome ◽  
Paenibacillus Polymyxa ◽  
Draft Genome Sequence ◽  
Content Type

Here, we report the draft genome sequence of the Paenibacillus polymyxa 3A-25AI strain, isolated from the rhizosphere of wild grass. This strain inhibits Phytophthora capsici and Rhizoctonia solani phytopathogens. The genome size is 5.6 Mb, with a G+C content of 45.59%, and contains 5,079 genes, 4,968 coding DNA sequences (CDSs), 35 tRNAs, 3 rRNAs, and 72 unexpected miscellaneous RNA (miscRNA) features.

scholarly journals Draft Genome Sequence of Halotolerant Bacterium Chromohalobacter salexigens ANJ207, Isolated from Salt Crystal Deposits in Pipelines

2019 ◽  
Vol 8 (15) ◽  
Author(s):  
Alok Kumar Srivastava ◽  
Anjney Sharma ◽  
Ruchi Srivastava ◽  
Praveen Kumar Tiwari ◽  
Alok Kumar Singh ◽  
...  
Keyword(s):  
Genome Sequence ◽  
De Novo ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Salt Crystal ◽  
Draft Assembly ◽  
Content Type ◽  
Halotolerant Bacterium ◽  
Nacl Concentration ◽  
Chromohalobacter Salexigens

Chromohalobacter salexigens ANJ207 was isolated from a salt crystal and is known to tolerate up to 30% NaCl concentration. Here, we report the de novo draft assembly of C. salexigens ANJ207.

scholarly journals Draft Genome Sequence of Microbacterium oleivorans Strain A9, a Bacterium Isolated from Chernobyl Radionuclide-Contaminated Soil

2017 ◽  
Vol 5 (14) ◽  
Author(s):  
Philippe Ortet ◽  
Nicolas Gallois ◽  
Laurie Piette ◽  
Justine Long ◽  
Catherine Berthomieu ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Dna Sequences ◽  
Contaminated Soil ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Rrna Genes ◽  
Trna Genes ◽  
Exclusion Zone ◽  
Content Type

ABSTRACT Here, we present the draft genome sequence of Microbacterium oleivorans strain A9, a uranium-tolerant actinobacterium which has been isolated from radionuclide-contaminated soil from the Chernobyl exclusion zone. It is composed of 22 contigs totaling 2,954,335 bp and contains 2,813 coding DNA sequences, one cluster of rRNA genes, and 45 tRNA genes.

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