scholarly journals Complete Genome Sequence of Tomato Spotted Wilt Virus , a South Korean Isolate from Gerbera jamesonii

2021 ◽  
Vol 10 (34) ◽  
Author(s):  
San Yeong Kim ◽  
Sangmin Bak ◽  
Sung Tae Kim ◽  
Eunsook Lee ◽  
Dae-Hong Lee ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Tomato Spotted Wilt Virus ◽  
Korean Isolate ◽  
Gerbera Jamesonii ◽  
South Korean ◽  
Tomato Spotted Wilt ◽  
Wilt Virus

The genome sequence of Tomato spotted wilt orthotospovirus (TSWV) isolated from gerbera was determined. The genome consists of L, M, and S segments containing 8,920, 4,775, and 2,970 nucleotides, respectively.

Analysis of the first complete genome sequence of an Australian tomato spotted wilt virus isolate

2016 ◽  
Vol 45 (5) ◽  
pp. 509-512 ◽  
Author(s):  
Richard Moyle ◽  
Lara-Simone Pretorius ◽  
Jessica Dalton-Morgan ◽  
Denis Persley ◽  
Peer Schenk
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Tomato Spotted Wilt Virus ◽  
Virus Isolate ◽  
Tomato Spotted Wilt ◽  
Wilt Virus

Complete genome sequence of a South Korean isolate of Brugmansia mosaic virus

2013 ◽  
Vol 158 (9) ◽  
pp. 2019-2022 ◽  
Author(s):  
Fumei Zhao ◽  
Seungmo Lim ◽  
Ran Hee Yoo ◽  
Hyoun-Sub Lim ◽  
Suk-Yoon Kwon ◽  
...  
Keyword(s):  
Mosaic Virus ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Korean Isolate ◽  
South Korean

scholarly journals First Complete Genome Sequence of Cucurbit aphid-borne yellows virus from Papua New Guinea

2018 ◽  
Vol 6 (11) ◽  
Author(s):  
Solomon Maina ◽  
Martin J. Barbetti ◽  
Owain R. Edwards ◽  
David Minemba ◽  
Michael W. Areke ◽  
...  
Keyword(s):  
Papua New Guinea ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
New Guinea ◽  
Korean Isolate ◽  
Rna Seq ◽  
Content Type ◽  
South Korean ◽  
Other World

ABSTRACT Analysis of an RNA-Seq library from cucumber leaf RNA revealed the first complete genome sequence of Cucurbit aphid-borne yellows virus (CABYV) from Papua New Guinea. We compared it with 36 complete CABYV genomes from other world regions. It most resembled the genome of South Korean isolate GS6.

Resistance-breaking tomato spotted wilt virus variant that recently occurred in pepper in South Korea is a genetic reassortant

Plant Disease ◽  
2021 ◽  
Author(s):  
Sun-Jung Kwon ◽  
Young-Eun Cho ◽  
Oh-Hun Kwon ◽  
Hyung-Gon Kang ◽  
Jang-Kyun Seo
Keyword(s):  
South Korea ◽  
Genome Sequence ◽  
Tomato Spotted Wilt Virus ◽  
Dominant Gene ◽  
Potential Threat ◽  
Viral Pathogen ◽  
South Korean ◽  
Tomato Spotted Wilt ◽  
Resistance Breaking ◽  
Wilt Virus

Tomato spotted wilt virus (TSWV) is a destructive viral pathogen in various crops, including pepper. While the single dominant gene Tsw has been utilized in pepper breeding to confer resistance to TSWV, the occurrence of TSWV variants that overcome Tsw-mediated resistance has been reported in various countries after several years of growing resistant cultivars. In this study, we determined the complete genome sequence of a resistance-breaking TSWV variant (TSWV-YI) that recently emerged in pepper in South Korea. TSWV-YI infected all the resistant pepper cultivars tested. The phylogenetic and recombination analyses of the complete TSWV-YI genome sequence showed that it is a reassortant that acquired its L and M RNA segments from the existing South Korean TSWV population and its S RNA in an isolate from another country. Given that TSWV-YI is a resistance-breaking variant, it appears that reassortment of the S RNA led to the emergence of this variant that breaks the Tsw gene in pepper grown in South Korea. Our results suggest that resistance-breaking TSWV variants are a potential threat to pepper production in South Korea and that strategies to manage these variants should be developed to ensure sustainable pepper production.

scholarly journals Complete Genome Sequence of Apricot Pseudo-Chlorotic Leaf Spot Virus from Prunus persica in South Korea

2019 ◽  
Vol 8 (20) ◽  
Author(s):  
San Yeong Kim ◽  
Sangmin Bak ◽  
Euncheol Seo ◽  
Se Hyun Seong
Keyword(s):  
South Korea ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Leaf Spot ◽  
Complete Genome ◽  
Prunus Persica ◽  
Korean Isolate ◽  
Spot Virus ◽  
South Korean ◽  
Chlorotic Leaf

The complete genome sequence of Apricot pseudo-chlorotic leaf spot virus (APCLSV) isolate YC2, a South Korean isolate, was determined. The complete genome sequence was 7,491 nucleotides long and has a poly(A) tail.

scholarly journals Complete Genome Sequence of Rehmannia Mosaic Virus Infecting Rehmannia glutinosa in South Korea

2016 ◽  
Vol 4 (1) ◽  
Author(s):  
Seungmo Lim ◽  
Fumei Zhao ◽  
Ran Hee Yoo ◽  
Davaajargal Igori ◽  
Jae Cheol Jeong ◽  
...  
Keyword(s):  
South Korea ◽  
Mosaic Virus ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Natural Infection ◽  
Korean Isolate ◽  
Rehmannia Glutinosa ◽  
South Korean ◽  
Generation Sequencing

The complete genome sequence of a South Korean isolate of Rehmannia mosaic virus (ReMV) infecting Rehmannia glutinosa was determined through next-generation sequencing and Sanger sequencing. To our knowledge, this is the first report of a natural infection of R. glutinosa by ReMV in South Korea.

scholarly journals Complete Genome Sequence of Nectarine stem pitting-associated virus, Isolated from Prunus persica in Cheongdo County, South Korea

2017 ◽  
Vol 5 (35) ◽  
Author(s):  
Davaajargal Igori ◽  
Dasom Baek ◽  
San Yeong Kim ◽  
Euncheol Seo ◽  
Su-Heon Lee ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Prunus Persica ◽  
The United States ◽  
Korean Isolate ◽  
Genome Sequences ◽  
South Korean ◽  
Genome Nucleotide Sequence ◽  
Stem Pitting

ABSTRACT We report here the first complete genome sequence of a South Korean isolate of Nectarine stem pitting-associated virus (NSPaV) from peach and compare it with previously described complete NSPaV genome sequences. The highest whole-genome nucleotide sequence identity was 95.3% with GenBank accession no. KT273409 (NSPaV) from the United States.

scholarly journals Molecular Analysis of Tomato spotted wilt virus N Gene from Pakistan

2021 ◽  
Vol 25 (05) ◽  
pp. 1061-1065
Author(s):  
Adnan Ahmad
Keyword(s):  
Genetic Diversity ◽  
South African ◽  
Tomato Spotted Wilt Virus ◽  
Statistical Tests ◽  
Phylogenetic Reconstruction ◽  
N Gene ◽  
South Korean ◽  
Tomato Spotted Wilt ◽  
Standard Value ◽  
Wilt Virus

The molecular diversity of Tomato spotted wilt virus (TSWV) isolates from Pakistan was investigated based on nucleocapsid protein (N) gene. It revealed that the Pakistani isolates shared 98.2–99.3% (nt) and 95.7–97.4% (aa) identities with each other and 97.2–99.3% (nt) and 92.7–97.8% (aa) with other TSWV isolates retrieved from Genbank. In a neighbour-joining phylogenetic reconstruction, four Pakistani isolates clustered with South Korean and Turkish isolates and one with Australian and South African isolates. All the Pakistani isolates shared maximum genetic diversity (0.024–0.039 and 0.026–0.029) with South African (AJ296600) and Australian (AY879109) isolates and the lowest values of genetic diversity (0.009–0.013) was recorded with Czech Republican isolate (AJ296599). The gene differentiation co-efficient value (Fst) was 0.33 less than standard value noticed as 0.05145, between globally reported and Pakistani TSWV isolates considering it a frequent gene flow. The significant values of statistical tests based on three genetic differentiation analysis; Ks⃰; 4.86231, Z; 34.27778 and Snn; 0.55556 were observed. The negative values were recorded according to statistical test as Fu, & Li’s D ⃰ (-2.55465), Fu, & Li’s F ⃰ (-2.78103) and one positive value from Tajima’s D (2.10697). These results indicate low polymorphism frequency in TSWV population of Pakistan. © 2021 Friends Science Publishers

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