scholarly journals Closed Genome Sequences of Three Salmonella enterica Strains Belonging to Serovars Saintpaul, Weltevreden, and Thompson, Isolated from Mexico

2019 ◽  
Vol 8 (28) ◽  
Author(s):  
Narjol Gonzalez-Escalona ◽  
J. R. Aguirre-Sánchez ◽  
J. R. Ibarra-Rodríguez ◽  
C. Chaidez-Quiroz ◽  
Jaime Martinez-Urtaza
Keyword(s):  
River Water ◽  
Salmonella Enterica ◽  
Genome Sequences ◽  
Short Read ◽  
Content Type ◽  
Short Read Sequencing ◽  
Long Read ◽  
Sequence Types

Here, we report the genome sequences of three Salmonella enterica strains belonging to serovars Weltevreden (CFSAN047349), Saintpaul (CFSAN047351), and Thompson (CFSAN047352), isolated from river water in Sinaloa, Mexico. The genomes were closed by a combination of long-read and short-read sequencing. The strain sequence types (STs) are ST365, ST50, and ST26, respectively.

scholarly journals Closed Genome Sequence of Salmonella enterica Serovar Richmond Strain CFSAN000191, Obtained with Nanopore Sequencing

2018 ◽  
Vol 7 (23) ◽  
Author(s):  
Narjol González-Escalona ◽  
Kuan Yao ◽  
Maria Hoffmann
Keyword(s):  
Genome Sequence ◽  
Salmonella Enterica ◽  
Nanopore Sequencing ◽  
Short Read ◽  
Content Type ◽  
Short Read Sequencing ◽  
Long Read

Here we report the genome sequence of Salmonella enterica serovar Richmond strain CFSAN000191, isolated from tilapia from Thailand in 2005. The genome was determined by a combination of long-read and short-read sequencing.

scholarly journals Closed Genome Sequences of Two Clostridium botulinum Strains Obtained by Nanopore Sequencing

2018 ◽  
Vol 7 (9) ◽  
Author(s):  
Narjol Gonzalez-Escalona ◽  
Julie Haendiges ◽  
Jesse D. Miller ◽  
Shashi K. Sharma
Keyword(s):  
Environmental Sample ◽  
Clostridium Botulinum ◽  
Clinical Sample ◽  
Nanopore Sequencing ◽  
Genome Sequences ◽  
Short Read ◽  
Content Type ◽  
Short Read Sequencing ◽  
Long Read

Here we report the genome sequences of two toxin-producing Clostridium botuli num strains, one environmental sample (83F) and one clinical sample (CDC51232). The genomes were closed by a combination of long-read and short-read sequencing.

scholarly journals Complete Genome Sequence of Rubrobacter xylanophilus Strain AA3-22, Isolated from Arima Onsen in Japan

2019 ◽  
Vol 8 (34) ◽  
Author(s):  
Natsuki Tomariguchi ◽  
Kentaro Miyazaki
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Hot Spring ◽  
Sequencing Data ◽  
Short Read ◽  
Content Type ◽  
Short Read Sequencing ◽  
Oxford Nanopore ◽  
Long Read

Rubrobacter xylanophilus strain AA3-22, belonging to the phylum Actinobacteria, was isolated from nonvolcanic Arima Onsen (hot spring) in Japan. Here, we report the complete genome sequence of this organism, which was obtained by combining Oxford Nanopore long-read and Illumina short-read sequencing data.

scholarly journals Complete and Circularized Genome Sequences of 17 Xanthomonas Strains Responsible for Common Bacterial Blight of Bean

2021 ◽  
Vol 10 (31) ◽  
Author(s):  
Martial Briand ◽  
Mylène Ruh ◽  
Armelle Darrasse ◽  
Marie-Agnès Jacques ◽  
Nicolas W. G. Chen
Keyword(s):  
Bacterial Blight ◽  
Plant Pathogens ◽  
Common Bacterial Blight ◽  
Xanthomonas Citri ◽  
Genome Sequences ◽  
High Quality ◽  
Short Read ◽  
Content Type ◽  
Short Read Sequencing ◽  
Quality Material

We report the complete and circularized genome sequences of 17 strains of Xanthomonas citri pv. fuscans and Xanthomonas phaseoli pv. phaseoli, which cause common bacterial blight of bean. These new assemblies combining PacBio and short-read sequencing methods provide high-quality material for studying the evolution of these plant pathogens.

scholarly journals Complete Genome Sequence of Vibrio rotiferianus Strain AM7

2020 ◽  
Vol 9 (21) ◽  
Author(s):  
Kentaro Miyazaki ◽  
Apirak Wiseschart ◽  
Kusol Pootanakit ◽  
Kei Kitahara
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
The Novel ◽  
Sequencing Data ◽  
Short Read ◽  
Content Type ◽  
Short Read Sequencing ◽  
Oxford Nanopore ◽  
Long Read

ABSTRACT We isolated the novel strain Vibrio rotiferianus AM7 from the shell of an abalone. In this article, we report the complete genome sequence of this organism, which was obtained by combining Oxford Nanopore long-read and Illumina short-read sequencing data.

scholarly journals Closed Genome Sequences of 28 Foodborne Pathogens from the CFSAN Verification Set, Determined by a Combination of Long and Short Reads

2020 ◽  
Vol 9 (18) ◽  
Author(s):  
Narjol Gonzalez-Escalona ◽  
George John Kastanis ◽  
Ruth Timme ◽  
Dwayne Roberson ◽  
Maria Balkey ◽  
...  
Keyword(s):  
Foodborne Pathogens ◽  
Bacterial Strains ◽  
Genome Sequences ◽  
Short Read ◽  
Short Reads ◽  
Short Read Sequencing ◽  
Long Read

Foodborne pathogens have been implicated in illnesses worldwide. Here, we report the complete closed genome sequences of 28 bacterial strains belonging to 18 different species. These genomes belong to known foodborne pathogens. The genomes were closed by a combination of long-read and short-read sequencing.

scholarly journals Complete Genome Sequences of Eight Streptococcus equi subsp. zooepidemicus Strains Isolated from Mares in Estrus with Endometritis

2021 ◽  
Vol 10 (26) ◽  
Author(s):  
Grace I. Borlee ◽  
Steven M. Lakin ◽  
Marylee L. Kapuscinski ◽  
Zaid Abdo ◽  
Mark D. Stenglein ◽  
...  
Keyword(s):  
Complete Genome ◽  
Genome Sequences ◽  
Short Read ◽  
Content Type ◽  
Short Read Sequencing ◽  
Biofilm Production ◽  
Streptococcus Equi ◽  
Clinical Cases

Eight isolates of Streptococcus equi subsp. zooepidemicus were isolated from mares with clinical cases of endometritis. S. equi subsp. zooepidemicus strains were chosen for sequencing based on differing levels of biofilm production in vitro . Using Illumina short-read sequencing in conjunction with MinION sequencing, we report the genomes of eight isolates.

scholarly journals Closed Genome Sequence of a Salmonella enterica Serotype Senftenberg Strain Carrying the mcr-9 Gene Isolated from Broken Chicken Eggshells in Trinidad and Tobago

2021 ◽  
Vol 10 (21) ◽  
Author(s):  
Meghan Maguire ◽  
Anisa S. Khan ◽  
Abiodun A. Adesiyun ◽  
Karla Georges ◽  
Narjol Gonzalez-Escalona
Keyword(s):  
Trinidad And Tobago ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Salmonella Enterica ◽  
Complete Genome ◽  
Foodborne Pathogen ◽  
Sequence Type ◽  
Short Read ◽  
Content Type ◽  
Short Read Sequencing

Salmonella enterica is a highly important foodborne pathogen worldwide. We report the complete genome sequence of a sequence type 14 Salmonella enterica serotype Senftenberg strain carrying the mcr-9 gene in a plasmid isolated from broken chicken eggshells in Trinidad and Tobago, obtained by using a combination of long- and short-read sequencing.

scholarly journals Genome Sequences of Four Nonhuman/Nonclinical Salmonella enterica Serovar Kentucky ST198 Isolates Recovered between 1972 and 1973

2017 ◽  
Vol 5 (11) ◽  
Author(s):  
Seon-Woo Kim ◽  
Bradd J. Haley ◽  
Dwayne Roberson ◽  
Marc Allard ◽  
Thomas S. Hammack ◽  
...  
Keyword(s):  
Host Specificity ◽  
Salmonella Enterica ◽  
Genome Sequences ◽  
Multiple Sequence ◽  
Genomic Features ◽  
Content Type ◽  
Sequence Types

ABSTRACT Salmonella enterica serovar Kentucky is a polyphyletic member of S. enterica subclade A1 with multiple sequence types that often colonize the same hosts but in different frequencies on different continents. To evaluate the genomic features involved in S. Kentucky host specificity, we sequenced the genomes of four isolates recovered in the 1970s.

scholarly journals Complete Genome Sequences of Four Salmonella enterica Strains Associated with Pistachios Assembled Using a Combination of Short- and Long-Read Sequencing

2019 ◽  
Vol 8 (38) ◽  
Author(s):  
Julie Haendiges ◽  
Narjol Gonzalez-Escalona ◽  
Jesse D. Miller ◽  
Maria Hoffmann
Keyword(s):  
Salmonella Enterica ◽  
Complete Genome ◽  
Hybrid Assembly ◽  
Sequencing Technology ◽  
Genome Sequences ◽  
Content Type ◽  
Assembly Method ◽  
Long Read

Here, we report the genomes of two Salmonella enterica subsp. enterica serovar Montevideo strains (CFSAN005645 and FCC0123) and two Salmonella enterica subsp. enterica serovar Senftenberg strains (FSW0104 and CFSAN087304) isolated from pistachios. The genomes were closed using a hybrid assembly method using short- and long-read sequencing technology.

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