scholarly journals Draft Genome Sequence of Chromobacterium violaceum RDN09, Isolated from a Patient with a Wound Infection in Bangladesh

2020 ◽  
Vol 9 (42) ◽  
Author(s):  
Razib Mazumder ◽  
Ahmed Abdullah ◽  
Arif Hussain ◽  
Dilruba Ahmed ◽  
Dinesh Mondal
Keyword(s):  
Genome Sequence ◽  
Genome Assembly ◽  
Draft Genome ◽  
Opportunistic Pathogen ◽  
Chromobacterium Violaceum ◽  
Draft Genome Sequence ◽  
Infected Wound ◽  
Content Type ◽  
Life Threatening ◽  
Adult Male Patient

ABSTRACT Chromobacterium violaceum is an emerging environmental opportunistic pathogen that causes life-threatening infections in humans. Here, we describe the draft genome sequence of Chromobacterium violaceum RDN09, isolated from the infected wound of an adult male patient in Bangladesh. The genome assembly consists of 4,736,739 bp spread across 84 contigs.

scholarly journals Draft Genome Sequence of NDM-1-Producing Leclercia adecarboxylata

2017 ◽  
Vol 5 (17) ◽  
Author(s):  
Yannick Hoyos-Mallecot ◽  
María Dolores Rojo-Martín ◽  
Rémy A. Bonnin ◽  
Elodie Creton ◽  
Jose María Navarro Marí ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Opportunistic Pathogen ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Total Length

ABSTRACT Here, we provide the first draft genome sequence of NDM-1-producing Leclercia adecarboxylata, a human-opportunistic pathogen. The draft genome sequence consists of a total length of 5.13 Mbp, with an average G+C content of 55.2%.

scholarly journals Draft Genome Sequence of Bacillus marisflavi CK-NBRI-03, Isolated from Agricultural Soil

2020 ◽  
Vol 9 (7) ◽  
Author(s):  
Mayank Gupta ◽  
Puneet Singh Chauhan ◽  
Sudhir K. Sopory ◽  
Sneh L. Singla-Pareek ◽  
Nidhi Adlakha ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Genome Assembly ◽  
Agricultural Soil ◽  
Draft Genome ◽  
Uttar Pradesh ◽  
Draft Genome Sequence ◽  
Positive Bacterium ◽  
Gram Positive ◽  
Content Type ◽  
Draft Genome Assembly

Here, we report the 4.34-Mb draft genome assembly of Bacillus marisflavi CK-NBRI-03 (or P3), a Gram-positive bacterium, with an average G+C content of 48.66%. P3 was isolated from agricultural soil from the Badaun (midwestern plain zone) region of Uttar Pradesh, India.

scholarly journals Draft Genome Sequence of Xylaria hypoxylon DSM 108379, a Ubiquitous Fungus on Hardwood

2019 ◽  
Vol 8 (44) ◽  
Author(s):  
Enrico Büttner ◽  
Christiane Liers ◽  
Martin Hofrichter ◽  
Anna Maria Gebauer ◽  
Harald Kellner
Keyword(s):  
Genome Sequence ◽  
Genome Assembly ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Deciduous Trees ◽  
Content Type

The saprotrophic ascomycete Xylaria hypoxylon is a widespread wood-decaying fungus on deciduous trees. Here, we report its draft genome sequence. The genome assembly has a size of 42.8 Mbp and a G+C content of 47.1% and includes 11,038 predicted genes.

scholarly journals Draft Genome Sequence of Clostridium sp. Strain chh4-2 Isolated from Human Feces

2018 ◽  
Vol 6 (8) ◽  
Author(s):  
Chien-Hsun Huang ◽  
Jong-Shian Liou ◽  
Chun-Lin Wang ◽  
Lina Huang
Keyword(s):  
Genome Sequencing ◽  
Genome Sequence ◽  
Genome Assembly ◽  
Fecal Sample ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome ◽  
Human Feces ◽  
Content Type ◽  
Old Adult

ABSTRACT Here, we report the draft genome sequence of a Clostridium sp. strain isolated from a fecal sample of a 34-year-old adult male in Taiwan. This strain may represent a new bacterium, as suggested by a comparison based on whole-genome sequencing. The genome assembly comprised 6,089,737 bp, with a 45.63% G+C content.

scholarly journals Draft Genome Sequence of Serratia rubidaea, a Potential Opportunistic Pathogen Isolated from Food in Italy

2021 ◽  
Vol 10 (30) ◽  
Author(s):  
Alexandra Chiaverini ◽  
Marco Di Domenico ◽  
Ilaria Del Matto ◽  
Franca Rossi ◽  
Gabriella Centorotola ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Large Scale ◽  
Draft Genome ◽  
Food Product ◽  
Opportunistic Pathogen ◽  
Draft Genome Sequence ◽  
Aminoglycoside Resistance ◽  
Content Type ◽  
Aminoglycoside Resistance Genes ◽  
Serratia Rubidaea

Serratia rubidaea has emerged in recent years as an opportunistic nosocomial pathogen. Here, we present the draft genome sequence of an isolate derived from an industrial meat food product purchased in a large-scale retail store that revealed fluoroquinolone, β-lactam, and aminoglycoside resistance genes and two different host-unspecific prophages.

scholarly journals Draft Genome Sequence of a New Delhi Metallo-β-Lactamase (NDM-1)-Producing Providencia stuartii Strain Isolated in Lima, Peru

2020 ◽  
Vol 9 (39) ◽  
Author(s):  
Lizet Lezameta ◽  
Diego Cuicapuza ◽  
Alejandra Dávila-Barclay ◽  
Susan Torres ◽  
Guillermo Salvatierra ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Opportunistic Pathogen ◽  
Private Clinic ◽  
Draft Genome Sequence ◽  
New Delhi ◽  
Emergency Patient ◽  
Content Type ◽  
Providencia Stuartii

ABSTRACT Providencia stuartii is an opportunistic pathogen of the Enterobacteriales order. Here, we report the 4,594,658-bp draft genome sequence of a New Delhi metallo-β-lactamase (NDM-1)-producing Providencia stuartii strain that was isolated from an emergency patient in a private clinic in Lima, Peru.

scholarly journals Draft Genome Sequence of a Serratia marcescens Strain Isolated from the Pitcher Fluids of a Sarracenia Pitcher Plant

2020 ◽  
Vol 9 (2) ◽  
Author(s):  
Shumeng Zhang ◽  
Srinivasa R. Chaluvadi ◽  
Jeffrey L. Bennetzen
Keyword(s):  
Serratia Marcescens ◽  
Genome Sequence ◽  
Genome Assembly ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Illumina Platform ◽  
Pitcher Plant ◽  
Coding Sequences ◽  
Content Type

The genome of a Serratia marcescens strain (C7) that was found in the pitcher fluids of a Sarracenia rosea pitcher plant was sequenced using the Illumina platform. A 5,543,750-bp genome assembly was obtained. A total of 6,278 coding sequences are predicted from this assembly.

scholarly journals Draft Genome Sequence of Providencia rettgeri APW139_S1, an NDM-18-Producing Clinical Strain Originating from Hospital Effluent in South Africa

2019 ◽  
Vol 8 (21) ◽  
Author(s):  
Noyise B. Ntshobeni ◽  
Mushal Allam ◽  
Arshad Ismail ◽  
Daniel G. Amoako ◽  
Sabiha Y. Essack ◽  
...  
Keyword(s):  
South Africa ◽  
Genome Sequence ◽  
Draft Genome ◽  
Opportunistic Pathogen ◽  
Draft Genome Sequence ◽  
Clinical Strain ◽  
New Delhi ◽  
Providencia Rettgeri ◽  
Content Type ◽  
Hospital Effluent

Providencia rettgeri is an opportunistic pathogen implicated in various clinical infections. Here, we report the genome sequence of a Providencia rettgeri strain isolated from hospital effluent in South Africa, which harbors the New Delhi metallo-β-lactamase (NDM) variant 18 gene (bla NDM-18).

scholarly journals Draft Genome Sequence of Methanobacterium sp. Strain 34x, Reconstructed from an Enriched Electromethanogenic Biocathode

2019 ◽  
Vol 8 (45) ◽  
Author(s):  
Ala’a Ragab ◽  
Dario R. Shaw ◽  
Krishna P. Katuri ◽  
Pascal E. Saikaly
Keyword(s):  
Genome Sequence ◽  
Genome Assembly ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome ◽  
Nucleotide Level ◽  
Content Type ◽  
Functional Potential ◽  
Insight Into ◽  
Genomic Similarity

A draft genome sequence of Methanobacterium sp. strain 34x was reconstructed from the metagenome of an enriched electromethanogenic biocathode operated in a microbial electrosynthesis (MES) reactor. Methanobacterium sp. strain 34x has 68.98% nucleotide-level genomic similarity with the closest related methanogen available with a whole-genome assembly, Methanobacterium lacus strain AL-21. This genome will provide insight into the functional potential of methanogens at the biocathodes of MES systems.

scholarly journals Draft Genome Sequence of Bradyrhizobium elkanii TnphoA 33, a Producer of Polyhydroxyalkanoates

2017 ◽  
Vol 5 (8) ◽  
Author(s):  
Erica M. Lopes ◽  
Luciano T. Kishi ◽  
Camila C. Fernandes ◽  
Fernanda Larozza Paganelli ◽  
Lucia M. C. Alves ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Genome Assembly ◽  
Draft Genome ◽  
Open Reading Frames ◽  
Draft Genome Sequence ◽  
Nitrogen Fixing ◽  
Content Type ◽  
Draft Genome Assembly ◽  
Bradyrhizobium Elkanii ◽  
Reading Frames

ABSTRACT The genus Bradyrhizobium comprises bacteria with the ability to form nitrogen-fixing symbioses with legumes. They are of great interest in agriculture, as well as for the production of biopolymers such as polyhydroxyalkanoates. Here, we report the draft genome assembly of Bradyrhizobium elkanii TnphoA 33 comprising 9 Mb, 1,124 contigs, and 9,418 open reading frames.

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