scholarly journals High-Quality Draft Genome Sequence of the Type Strain of Allorhizobium vitis, the Primary Causal Agent of Grapevine Crown Gall

2018 ◽  
Vol 7 (9) ◽  
Author(s):  
Han Ming Gan ◽  
Melvin Vun Jye Lee ◽  
Michael A. Savka
Keyword(s):  
Genome Sequence ◽  
Type Strain ◽  
Draft Genome ◽  
Hybrid Approach ◽  
Fold Increase ◽  
Draft Genome Sequence ◽  
High Quality ◽  
Content Type ◽  
Allorhizobium Vitis ◽  
Grapevine Crown Gall

Using Illumina and Nanopore reads, we assembled a high-quality draft genome sequence of Allorhizobium vitis K309T (= ATCC 49767T, = NCPPB 3554T), a phytopathogenic strain isolated from a grapevine in Australia. The hybrid approach generated 50% fewer contigs and a 3-fold increase in the N 50 value compared with the previous Illumina-only assembly.

scholarly journals Improved High-Quality Draft Genome Sequence and Annotation of Burkholderia contaminans LMG 23361T

2017 ◽  
Vol 5 (16) ◽  
Author(s):  
Ji Young Jung ◽  
Youngbeom Ahn ◽  
Ohgew Kweon ◽  
John J. LiPuma ◽  
David Hussong ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Benzalkonium Chloride ◽  
Type Strain ◽  
Draft Genome ◽  
Pharmaceutical Products ◽  
Draft Genome Sequence ◽  
Dairy Sheep ◽  
High Quality ◽  
Content Type ◽  
Burkholderia Contaminans

ABSTRACT Burkholderia contaminans LMG 23361 is the type strain of the species isolated from the milk of a dairy sheep with mastitis. Some pharmaceutical products contain disinfectants such as benzalkonium chloride (BZK) and previously we reported that B. contaminans LMG 23361T possesses the ability to inactivate BZK with high biodegradation rates. Here, we report an improved high-quality draft genome sequence of this strain.

scholarly journals High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella marina type strain (En5T)

2013 ◽  
Vol 8 (1) ◽  
pp. 37-46 ◽  
Author(s):  
Erko Stackebrandt ◽  
Olga Chertkov ◽  
Alla Lapidus ◽  
Matt Nolan ◽  
Susan Lucas ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Type Strain ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
High Quality

scholarly journals Draft Genome Sequence of the Moderately Thermophilic Actinobacterial Steroid-Transforming Saccharopolyspora hirsuta subsp. hirsuta Strain VKM Ac-666T

2020 ◽  
Vol 9 (1) ◽  
Author(s):  
Tatyana G. Lobastova ◽  
Victoria V. Fokina ◽  
Eugeny Y. Bragin ◽  
Victoriya Y. Shtratnikova ◽  
Irina P. Starodumova ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Sugarcane Bagasse ◽  
Type Strain ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Moderately Thermophilic ◽  
Saccharopolyspora Hirsuta

The draft genome sequence of the type strain Saccharopolyspora hirsuta subsp. hirsuta VKM Ac-666 was sequenced. This moderately thermophilic actinobacterial strain of sugarcane bagasse origin is able to transform different steroid substrates.

scholarly journals Improved De Novo Draft Genome Sequence of the Nocavionin-Producing Type Strain Nocardia terpenica IFM 0706 and Comparative Genomics with the Closely Related Strain Nocardia terpenica IFM 0406

2020 ◽  
Vol 9 (34) ◽  
Author(s):  
Anina Buchmann ◽  
Harald Gross
Keyword(s):  
Comparative Genomics ◽  
Genome Size ◽  
Genome Sequence ◽  
Type Strain ◽  
De Novo ◽  
Draft Genome ◽  
Pathogenic Strain ◽  
Draft Genome Sequence ◽  
Related Strain ◽  
Content Type

ABSTRACT We report an improved de novo draft genome sequence of the human-pathogenic strain Nocardia terpenica IFM 0706T. The resequencing unveiled that the genome size is larger than anticipated, reducing significantly the number of contigs and building a basis for comparison with the closely related strain N. terpenica IFM 0406.

scholarly journals Whole-Genome Sequences of Two Closely Related Bacteria, Actinomyces sp. Strain Chiba101 and Actinomyces denticolens DSM 20671T

2017 ◽  
Vol 5 (14) ◽  
Author(s):  
Yu Kanesaki ◽  
Taichiro Ishige ◽  
Yuriko Sekigawa ◽  
Tomoko Kobayashi ◽  
Yasushi Torii ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Whole Genome ◽  
Genome Sequences ◽  
High Quality ◽  
Content Type

ABSTRACT Actinomyces sp. strain Chiba101, isolated from an arthritic leg joint of a pig raised in Japan, is a bacterium closely related to Actinomyces denticolens. Here, we deciphered the complete genome sequence of Actinomyces sp. Chiba101 and the high-quality draft genome sequence of A. denticolens DSM 20671T.

scholarly journals High-Quality Draft Genome Sequence of Xanthomonas arboricola pv. juglandis CPBF 1521, Isolated from Leaves of a Symptomatic Walnut Tree in Portugal without a Past of Phytosanitary Treatment

2018 ◽  
Vol 7 (16) ◽  
Author(s):  
Camila Fernandes ◽  
Jochen Blom ◽  
Joël F. Pothier ◽  
Fernando Tavares
Keyword(s):  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
High Quality ◽  
Content Type ◽  
Walnut Tree ◽  
Phytosanitary Treatment ◽  
Xanthomonas Arboricola

Here, we report the draft genome sequence of Xanthomonas arboricola pv. juglandis CPBF 1521, isolated from symptomatic leaves of an ornamental walnut in a public site in Portugal without any record of phytosanitary treatment.

scholarly journals Draft Genome Sequence of Clostridium estertheticum subsp. laramiense DSM 14864T, Isolated from Spoiled Uncooked Beef

2019 ◽  
Vol 8 (47) ◽  
Author(s):  
Nikola Palevich ◽  
Faith P. Palevich ◽  
Paul H. Maclean ◽  
Ruy Jauregui ◽  
Eric Altermann ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Type Strain ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type

Clostridium estertheticum subsp. laramiense type strain DSM 14864 (ATCC 51254) was isolated from vacuum-packaged refrigerated spoiled beef. This report describes the generation and annotation of the 5.0-Mb draft genome sequence of C. estertheticum subsp. laramiense DSM 14864T.

scholarly journals Draft Genome Sequence of NRRL 5109, an Ex-Type Isolate of Aspergillus neoellipticus

2018 ◽  
Vol 7 (22) ◽  
Author(s):  
Licui Li ◽  
Tom Hsiang ◽  
Qili Li ◽  
Long Wang ◽  
Zhihe Yu
Keyword(s):  
Genome Sequence ◽  
Type Strain ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Type Isolate ◽  
Final Assembly

We report here a draft genome sequence of an ex-type strain of Aspergillus neoellipticus, NRRL 5109, which was isolated from pus of a case of chronic emphysema. The final assembly consists of 160 scaffolds totaling 27.55 Mbp (G+C content, 49.96%) and 8,858 predicted genes.

scholarly journals Draft Genome Sequence of KCTC 12630, the Type Strain of the Novel Species Sphingomonas ginsengisoli

2019 ◽  
Vol 8 (2) ◽  
Author(s):  
Yan-Qiong Li ◽  
Hui Zhang ◽  
Manik Prabhu Narsing Rao ◽  
Zhou-Yan Dong ◽  
Dalal Hussien M. Alkhalifah ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Type Strain ◽  
Novel Species ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
The Novel ◽  
Content Type

We report here the draft genome sequence of Sphingomonas ginsengisoli KCTC 12630T. The draft genome has a size of 3,045,889 bp and a G+C content of 67.1%.

scholarly journals High-Quality Draft Genome Sequence of Burkholderia contaminans CH-1, a Gram-Negative Bacterium That Metabolizes 2-Azahypoxanthine, a Plant Growth-Regulating Compound

2017 ◽  
Vol 5 (41) ◽  
Author(s):  
Jae-Hoon Choi ◽  
Hikaru Sugiura ◽  
Ryota Moriuchi ◽  
Hirokazu Kawagishi ◽  
Hideo Dohra
Keyword(s):  
Plant Growth ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Negative Bacterium ◽  
High Quality ◽  
Protein Coding ◽  
Coding Sequences ◽  
Content Type ◽  
Burkholderia Contaminans

ABSTRACT Burkholderia contaminans strain CH-1 converts 2-azahypoxnathine to 2-aza-8-oxohypoxanthine, plant growth-regulating compounds, by oxidation. We report here the high-quality draft genome sequence of B. contaminans CH-1. The genome contains 8,065 protein-coding sequences, including several genes possibly involved in metabolizing 2-azahypoxanthine.

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