scholarly journals A 33-Year-Old Plant Sample Contributes the First Complete Genomic Sequence of Potato Virus U

2018 ◽  
Vol 7 (23) ◽  
Author(s):  
Ian P. Adams ◽  
Neil Boonham ◽  
Roger A. C. Jones
Keyword(s):  
Amino Acid ◽  
Genome Sequence ◽  
Potato Virus ◽  
Genomic Sequence ◽  
Amino Acid Sequences ◽  
Plant Sample ◽  
Complete Genomic Sequence ◽  
Potato Sample ◽  
Complete Genomic

A Potato virus U isolate detected in a Peruvian potato sample collected in 1977 produced the first genome sequence of this virus. When this genome sequence was compared with those of other nepoviruses, the amino acid sequences of RNA1 and RNA2 were most similar to those of subgroup C nepoviruses.

scholarly journals Complete Genome Sequence of Potato Virus T from Bolivia, Obtained from a 33-Year-Old Sample

2018 ◽  
Vol 7 (18) ◽  
Author(s):  
Ian P. Adams ◽  
Jorge Abad ◽  
Cesar E. Fribourg ◽  
Neil Boonham ◽  
Roger A. C. Jones
Keyword(s):  
Genome Sequence ◽  
Potato Virus ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Genomic Sequence ◽  
Complete Genomic Sequence ◽  
Potato Sample ◽  
Type Isolate ◽  
Andean Potato ◽  
Complete Genomic

We present the complete genomic sequence of a Potato virus T (PVT) isolate originally obtained from a Bolivian potato sample collected in 1976, and we compare it with the genome of the PVT type isolate from Peru. There is an 81% nucleotide identity between the two genomes of this Andean potato virus.

scholarly journals First Complete Genome Sequence of Arracacha virus A Isolated from a 38-Year-Old Sample from Peru

2017 ◽  
Vol 5 (18) ◽  
Author(s):  
Ian P. Adams ◽  
Neil Boonham ◽  
Roger A. C. Jones
Keyword(s):  
Amino Acid ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Genomic Sequence ◽  
Mottle Virus ◽  
Complete Genomic Sequence ◽  
Complete Genomic

ABSTRACT We present here the first complete genomic sequence of Arracacha virus A from a Peruvian arracacha sample collected in 1975 and compare it with the genomes of other nepoviruses. Its RNA1 and RNA2 both had greatest amino acid identities with those of the subgroup A nepovirus Melon mild mottle virus.

scholarly journals Complete Genomic Sequence of Pseudoalteromonas sp. Strain SAO4-4, a Protease-Producing Bacterium Isolated from Seawater of the Atlantic Ocean

2018 ◽  
Vol 6 (22) ◽  
Author(s):  
Bai-Lu Tang ◽  
Jin-Cheng Rong ◽  
Yan-Ru Dang ◽  
Bin-Bin Xie ◽  
Xiu-Lan Chen ◽  
...  
Keyword(s):  
Organic Matter ◽  
Atlantic Ocean ◽  
Genome Sequence ◽  
Complete Genome ◽  
Genomic Sequence ◽  
Aquatic Environments ◽  
Complete Genomic Sequence ◽  
Content Type ◽  
Circular Chromosomes ◽  
Complete Genomic

ABSTRACT The complete genome of Pseudoalteromonas sp. strain SAO4-4, a protease-producing bacterium from seawater, is composed of two circular chromosomes and one plasmid. This genome sequence will provide a better understanding of the ecological roles of protease-producing bacteria in the degradation of organic matter in marine aquatic environments.

scholarly journals Complete Genomic Sequence of Dengue Virus Serotype 4 Isolated from Plasma Collected from a Haitian Child in 2014

2017 ◽  
Vol 5 (40) ◽  
Author(s):  
Maha A. Elbadry ◽  
Sarah K. White ◽  
Julia C. Loeb ◽  
Massimiliano S. Tagliamonte ◽  
Marco Salemi ◽  
...  
Keyword(s):  
South America ◽  
Dengue Virus ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Genomic Sequence ◽  
Complete Genomic Sequence ◽  
Virus Serotype ◽  
Genotype Ii ◽  
Complete Genomic

ABSTRACT While data are limited, there is increasing evidence that infections by dengue viruses are endemic in Haiti. In 2014, an outbreak caused by dengue virus 4 (DENV-4) followed a chikungunya fever outbreak. We present here the complete genome sequence of one isolate grouped within the genotype II South America and Caribbean DENV-4 clades.

scholarly journals Complete Genome Sequence of Porcine Parvovirus 2 Recovered from Swine Sera

2016 ◽  
Vol 4 (1) ◽  
Author(s):  
F. S. Campos ◽  
M. Kluge ◽  
A. C. Franco ◽  
A. Giongo ◽  
F. P. Valdez ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Genome Sequence ◽  
North American ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Genomic Sequence ◽  
Porcine Parvovirus ◽  
Complete Genomic Sequence ◽  
Metagenome Analysis ◽  
Complete Genomic

A complete genomic sequence of porcine parvovirus 2 (PPV-2) was detected by viral metagenome analysis on swine sera. A phylogenetic analysis of this genome reveals that it is highly similar to previously reported North American PPV-2 genomes. The complete PPV-2 sequence is 5,426 nucleotides long.

scholarly journals Genome Sequence Analysis of a G2P[4] Group A Rotavirus Strain with an Unusual Canine-Origin NSP1 A15 Genotype

2017 ◽  
Vol 5 (50) ◽  
Author(s):  
Chung-Chan Lee ◽  
Shih-Yen Chen ◽  
Chi-Neu Tsai ◽  
Cheng-Hsun Chiu
Keyword(s):  
Sequence Analysis ◽  
Genome Sequence ◽  
Acute Gastroenteritis ◽  
Genomic Sequence ◽  
Fecal Specimen ◽  
Complete Genomic Sequence ◽  
Genome Sequence Analysis ◽  
Group A Rotavirus ◽  
Group A ◽  
Complete Genomic

ABSTRACT Here, we disclose the complete genomic sequence of a rare rotavirus group A G2P[4]-I2-R2-C2-M2-A15-N2-T2-E2-H2 strain detected in a fecal specimen from a rotaviral acute gastroenteritis patient who had previously received the Rotarix vaccine.

scholarly journals Complete Genome Sequence of Vibrio gazogenes ATCC 43942

2017 ◽  
Vol 5 (30) ◽  
Author(s):  
Phani M. Gummadidala ◽  
Michael E. Holder ◽  
Jacqueline L. O’Brien ◽  
Nadim J. Ajami ◽  
Joseph F. Petrosino ◽  
...  
Keyword(s):  
Knowledge Base ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Genomic Sequence ◽  
Complete Genomic Sequence ◽  
Content Type ◽  
Complete Genomic

ABSTRACT Vibrio gazogenes ATCC 43942 has the potential to synthesize a plethora of metabolites which are of clinical and agricultural significance in response to environmental triggers. The complete genomic sequence of Vibrio gazogenes ATCC 43942 is reported herein, contributing to the knowledge base of strains in the Vibrio genus.

scholarly journals First Complete Genomic Sequence of a Rabies Virus from the Republic of Tajikistan Obtained Directly from a Flinders Technology Associates Card

2017 ◽  
Vol 5 (27) ◽  
Author(s):  
H. Goharriz ◽  
D. A. Marston ◽  
F. Sharifzoda ◽  
R. J. Ellis ◽  
D. L. Horton ◽  
...  
Keyword(s):  
Rabies Virus ◽  
Genome Sequence ◽  
Genomic Sequence ◽  
Genetic Data ◽  
Brain Homogenate ◽  
Full Genome Sequence ◽  
Complete Genomic Sequence ◽  
Full Genome ◽  
The Republic ◽  
Complete Genomic

ABSTRACT A brain homogenate derived from a rabid dog in the district of Tojikobod, Republic of Tajikistan, was applied to a Flinders Technology Associates (FTA) card. A full-genome sequence of rabies virus (RABV) was generated from the FTA card directly without extraction, demonstrating the utility of these cards for readily obtaining genetic data.

scholarly journals Complete Genomic Sequence of an Australian Sindbis Virus Isolated 44 Years Ago Reveals Unique Indels in the E2 and nsP3 Proteins

2019 ◽  
Vol 8 (20) ◽  
Author(s):  
Paul Pickering ◽  
John G. Aaskov ◽  
Wenjun Liu
Keyword(s):  
Amino Acid ◽  
Complete Genome Sequence ◽  
Envelope Protein ◽  
Sindbis Virus ◽  
Genomic Sequence ◽  
Nonstructural Protein ◽  
Complete Genomic Sequence ◽  
Content Type ◽  
Culex Annulirostris ◽  
Complete Genomic

The complete genome sequence of a Sindbis virus (SINV) strain (SINV_AUS_1975_18953) isolated in Australia in 1975 from Culex annulirostris mosquitoes revealed unique deletions in amino acid positions 182 to 184 and 201 to 228 of the E2 envelope protein and multiple indels in the nonstructural protein 3 (nsP3).

scholarly journals Complete Genome Sequence of a GII.17 Norovirus Isolated from a Rhesus Monkey in China

2016 ◽  
Vol 4 (5) ◽  
Author(s):  
Bo Liu ◽  
Yufen Tao ◽  
Chao Li ◽  
Xintong Li ◽  
Jiansheng Liu ◽  
...  
Keyword(s):  
Rhesus Monkey ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Rhesus Monkeys ◽  
Genomic Sequence ◽  
Complete Genomic Sequence ◽  
Predominant Genotype ◽  
Epidemic Season ◽  
Complete Genomic

The previously silent GII.17 norovirus was found to be the predominant genotype causing major epidemics in China in the 2014–2015 winter epidemic season. We report here the complete genomic sequence of a GII.17 norovirus (mky/GII.17/KM1509/CHN/2015) that infected rhesus monkeys at a monkey farm in southwestern China.

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