scholarly journals Complete Genome Sequences of Rhodothermus marinus Strains AA2-13 and AA3-38, Isolated from Arima Onsen Hot Spring in Japan

2020 ◽  
Vol 9 (2) ◽  
Author(s):  
Natsuki Tomariguchi ◽  
Kentaro Miyazaki
Keyword(s):  
Complete Genome ◽  
Close Relationships ◽  
Hot Spring ◽  
Nucleotide Identity ◽  
Average Nucleotide Identity ◽  
Rhodothermus Marinus ◽  
Genome Sequences ◽  
Content Type

We isolated Rhodothermus marinus strains AA2-13 and AA3-38 from Arima Onsen, a hot spring in Japan, and sequenced their genomes. The average nucleotide identity between their genomes was 99.2%, and that with the genome of R. marinus strain DSM 4252T (isolated from Iceland) was ∼95.2%, suggesting close relationships among these strains.

scholarly journals Complete Genome Sequences of Thermus thermophilus Strains HB5002 and HB5008, Isolated from Mine Hot Spring in Japan

2021 ◽  
Vol 10 (16) ◽  
Author(s):  
Kentaro Miyazaki ◽  
Toshiyuki Moriya ◽  
Natsuko Tokito ◽  
Tairo Oshima ◽  
Kei Yura ◽  
...  
Keyword(s):  
Whole Genome Sequencing ◽  
Genome Sequencing ◽  
Complete Genome ◽  
Hot Spring ◽  
Thermus Thermophilus ◽  
Nucleotide Identity ◽  
Whole Genome ◽  
Average Nucleotide Identity ◽  
Genome Sequences ◽  
Content Type

ABSTRACT We isolated Thermus thermophilus strains HB5002 and HB5008 from Mine Hot Spring in Japan. Whole-genome sequencing revealed that they showed ∼100% average nucleotide identity to each other, ≥98.53% to the T. thermophilus strains originating from the same spot but ≤97.64% to the T. thermophilus strains from geographically different places in Japan.

scholarly journals Genome Sequences of Two Choline-Utilizing Methanogenic Archaea, Methanococcoides spp., Isolated from Marine Sediments

2019 ◽  
Vol 8 (18) ◽  
Author(s):  
Gordon Webster ◽  
Alex J. Mullins ◽  
Andrew J. Watkins ◽  
Edward Cunningham-Oakes ◽  
Andrew J. Weightman ◽  
...  
Keyword(s):  
Marine Sediments ◽  
Dna Hybridization ◽  
In Silico ◽  
Methanogenic Archaea ◽  
Nucleotide Identity ◽  
Average Nucleotide Identity ◽  
Genome Sequences ◽  
Content Type

The genomes of two Methanococcoides spp. that were isolated from marine sediments and are capable of carrying out methanogenesis from choline and other methylotrophic substrates were sequenced. The average nucleotide identity and in silico DNA-DNA hybridization analyses demonstrate that they represent species different from those previously described.

scholarly journals Draft Genome Sequences of Thiorhodococcus mannitoliphagus and Thiorhodococcus minor, Purple Sulfur Photosynthetic Bacteria in the Gammaproteobacterial Family Chromatiaceae

2020 ◽  
Vol 9 (14) ◽  
Author(s):  
Fabiola A. Aviles ◽  
Terry E. Meyer ◽  
John A. Kyndt
Keyword(s):  
Photosynthetic Bacteria ◽  
Draft Genome ◽  
Nucleotide Identity ◽  
Whole Genome ◽  
Average Nucleotide Identity ◽  
Genome Sequences ◽  
Content Type

We have determined the draft genome sequences of Thiorhodococcus mannitoliphagus and Thiorhodococcus minor for comparison with those of T. drewsii and Imhoffiella purpurea. According to average nucleotide identity (ANI) and whole-genome phylogenetic comparisons, these two species are clearly distinct from the Imhoffiella species and T. drewsii.

scholarly journals Complete Genome Sequence of Buttiauxella agrestis DSM 9389

2021 ◽  
Vol 10 (19) ◽  
Author(s):  
Nao Nakamichi ◽  
Ryota Moriuchi ◽  
Hideo Dohra ◽  
Hiroyuki Futamata ◽  
Yosuke Tashiro
Keyword(s):  
16S Rrna ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Membrane Vesicle ◽  
16S Rrna Genes ◽  
Rrna Genes ◽  
Nucleotide Identity ◽  
Average Nucleotide Identity ◽  
Content Type

ABSTRACT We report here the complete genome sequence of Buttiauxella agrestis DSM 9389, which harbors eight 16S rRNA genes classified into three types. The genome sequence of this strain showed a high average nucleotide identity (97.3%) with that of the highly membrane vesicle-producing strain B. agrestis ATCC 33320T.

scholarly journals Draft Genome Sequences of Plant-Pathogenic Klebsiella variicola Strains Isolated from Plantain in Haiti

2020 ◽  
Vol 9 (29) ◽  
Author(s):  
James C. Fulton ◽  
Jeannie M. Klein ◽  
Sladana Bec ◽  
Joubert Fayette ◽  
Karen A. Garrett ◽  
...  
Keyword(s):  
Type Strain ◽  
Draft Genome ◽  
Nucleotide Identity ◽  
Average Nucleotide Identity ◽  
Genome Sequences ◽  
Content Type

ABSTRACT The genus Klebsiella includes pathogenic and nonpathogenic species. We report the 5.57-Mb genome sequences of two Klebsiella variicola strains, G18-1365 and G18-1376, isolated from symptomatic plantain plants in Haiti. These strains are genetically closely related (average nucleotide identity [ANI] > 99%) to the previously described type strain of K. variicola, DSM 15968.

scholarly journals Complete Genome Sequence of Bacillus cereus Strain PL1, Isolated from Soil in Japan

2020 ◽  
Vol 9 (12) ◽  
Author(s):  
Kentaro Miyazaki ◽  
Erina Hase ◽  
Tomomasa Maruya
Keyword(s):  
Bacillus Cereus ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Soil Bacterium ◽  
Nucleotide Identity ◽  
Average Nucleotide Identity ◽  
Content Type ◽  
Bacterium Strain

We isolated the soil bacterium strain PL1 and herein report its complete genome sequence. The strain presented 97% average nucleotide identity (ANI) to Bacillus cereus and 91% ANIs to other members of the B. cereus group, indicating that it is affiliated with B. cereus.

scholarly journals Genome Sequences of Five Streptomyces Bacteriophages Forming Cluster BG

2017 ◽  
Vol 5 (28) ◽  
Author(s):  
Richard Donegan-Quick ◽  
Zane A. Gibbs ◽  
Patricia O. Amaku ◽  
Joshua T. Bernal ◽  
Dana A. M. Boyd ◽  
...  
Keyword(s):  
Streptomyces Griseus ◽  
The Other ◽  
Nucleotide Identity ◽  
Strain Atcc ◽  
Average Nucleotide Identity ◽  
Genome Sequences ◽  
Content Type

ABSTRACT Cluster BG of the actinobacteriophage was formed upon discovery of five novel bacteriophages isolated by enrichment from their host, Streptomyces griseus subsp. griseus strain ATCC 10137. Four members of this cluster (BabyGotBac, Maih, TP1605, and YDN12) share over 89% average nucleotide identity, while the other (Xkcd426) has only 72% similarity to other cluster members.

scholarly journals Complete Genome Sequence of Thermus thermophilus Strain HB5018, Isolated from Mine Hot Spring in Japan

2021 ◽  
Vol 10 (10) ◽  
Author(s):  
Kentaro Miyazaki ◽  
Toshiyuki Moriya ◽  
Naoki Nemoto ◽  
Tairo Oshima ◽  
Kei Yura ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Type Strain ◽  
Hot Spring ◽  
Thermus Thermophilus ◽  
Species Conservation ◽  
Average Nucleotide Identity ◽  
Content Type ◽  
The Past

ABSTRACT We isolated Thermus thermophilus strain HB5018 from Mine Hot Spring in Japan, where the type strain HB8 was isolated nearly half a century ago. The complete genome sequence of HB5018 showed 99.1% average nucleotide identity with HB8, suggesting strict species conservation in the habitat over the past 50 years.

scholarly journals Complete Genome Sequences of Four Halophilic Thermus thermophilus Strains Isolated from Arima Hot Spring in Japan

2021 ◽  
Vol 10 (40) ◽  
Author(s):  
Kentaro Miyazaki ◽  
Natsuki Tomariguchi ◽  
Yuko Ueno
Keyword(s):  
Genome Sequencing ◽  
Complete Genome ◽  
Hot Spring ◽  
Thermus Thermophilus ◽  
Genome Sequences ◽  
Content Type ◽  
Complete Genome Sequencing ◽  
Genomic Conservation

We isolated four Thermus thermophilus strains from Arima Hot Spring in Japan. Complete genome sequencing revealed that they showed average nucleotide identities of ≥99.21% to each other and to strains previously isolated from the same spot, but of ≤97.86% to strains from geographically different spots in Japan, reflecting habitat-specific genomic conservation.

scholarly journals Draft Genome Sequences of Pseudomonas syringae pv. tomato Strains J4 and J6, Isolated in Florida

2021 ◽  
Vol 10 (15) ◽  
Author(s):  
Naweena Thapa ◽  
Sujan Timilsina ◽  
Gerald V. Minsavage ◽  
Juliana Pereira-Martin ◽  
Gary E. Vallad ◽  
...  
Keyword(s):  
Pseudomonas Syringae ◽  
Draft Genome ◽  
Nucleotide Identity ◽  
Average Nucleotide Identity ◽  
Genome Sequences ◽  
Content Type ◽  
Bacterial Speck

ABSTRACT Pseudomonas syringae pv. tomato causes bacterial speck in tomato. We report the genome sequences of two P. syringae pv. tomato strains, J4 and J6, that are genetically closely related, with >99.9 average nucleotide identity (ANI), but vary in the presence of coronatine-associated genes.

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