scholarly journals Complete Genome Sequence of “Candidatus Syntrophocurvum alkaliphilum” Strain B(2M), Obtained from the Metagenome of a Salt-Tolerant Alkaliphilic Anaerobic Syntrophic Butyrate-Degrading Consortium

2020 ◽  
Vol 9 (6) ◽  
Author(s):  
Andrey V. Mardanov ◽  
Dmitry Y. Sorokin ◽  
Alexey V. Beletsky ◽  
Nikolai V. Ravin
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Molecular Mechanisms ◽  
Soda Lake ◽  
Salt Tolerant ◽  
Sulfate Reducing ◽  
Reducing Conditions

A highly salt-tolerant and alkaliphilic syntrophic consortium that degrades butyrate under sulfate-reducing conditions was purified from a hypersaline soda lake in southwest Siberia. Here, we present the complete genome sequence of the syntrophic primary butyrate degrader in order to understand the molecular mechanisms of interaction between consortium members.

scholarly journals Complete Genome Sequence of the Hyperthermophilic Sulfate-Reducing Bacterium Thermodesulfobacterium geofontis OPF15T

2013 ◽  
Vol 1 (2) ◽  
Author(s):  
J. G. Elkins ◽  
S. D. Hamilton-Brehm ◽  
S. Lucas ◽  
J. Han ◽  
A. Lapidus ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Sulfate Reducing

scholarly journals Genome Sequence of the Piezophilic, Mesophilic Sulfate-Reducing Bacterium Desulfovibrio indicus J2 T

2016 ◽  
Vol 4 (2) ◽  
Author(s):  
Junwei Cao ◽  
Lois Maignien ◽  
Zongze Shao ◽  
Karine Alain ◽  
Mohamed Jebbar
Keyword(s):  
Sulfate Reduction ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Noncoding Rnas ◽  
Sulfate Reducing ◽  
The Family ◽  
Encoding Genes

The complete genome sequence of Desulfovibrio indicus J2 T , a member of the family Desulfovibrionaceae , consists of 3,966,573-bp in one contig and encodes 3,461 predicted genes, 5 noncoding RNAs, 3 rRNAs operons, and 52 tRNA-encoding genes. The genome is consistent with a heterotrophic, anaerobic lifestyle including the sulfate reduction pathway.

scholarly journals Complete Genome Sequence of Desulfobulbus oligotrophicus Prop6, an Anaerobic Deltabacterota Strain That Lacks Mercury Methylation Capability

2021 ◽  
Vol 10 (5) ◽  
Author(s):  
Peter T. Podar ◽  
Kellie Peyton ◽  
Ally Soren ◽  
Regina L. Wilpiszeski ◽  
Cynthia C. Gilmour ◽  
...  
Keyword(s):  
Sewage Sludge ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Evolutionary Genomics ◽  
Mercury Methylation ◽  
Content Type ◽  
Sulfate Reducing ◽  
Anoxic Environments ◽  
Environmental Adaptations

ABSTRACT Desulfobulbus oligotrophicus Prop6 is a sulfate-reducing, propionate-oxidizing Deltabacterota (formerly Deltaproteobacteria) strain from sewage sludge. Desulfobulbus species are found in anoxic environments, in animal microbiota, and some produce the neurotoxin methylmercury. The 3.1-Mbp D. oligotrophicus genome sequence enables studies of diverse environmental adaptations and the evolutionary genomics of mercury methylation mechanisms.

scholarly journals Complete Genome Sequence of Desulfovibrio desulfuricans IC1, a Sulfonate-Respiring Anaerobe

2019 ◽  
Vol 8 (31) ◽  
Author(s):  
Leslie A. Day ◽  
Kara B. De León ◽  
Megan L. Kempher ◽  
Jizhong Zhou ◽  
Judy D. Wall
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Desulfovibrio Desulfuricans ◽  
Sulfur Cycle ◽  
Circular Chromosome ◽  
Protein Coding ◽  
Content Type ◽  
Sulfate Reducing ◽  
Protein Coding Genes

We report the complete genome sequence of the anaerobic, sulfonate-respiring, sulfate-reducing bacterium Desulfovibrio desulfuricans IC1. The genome was assembled into a single 3.25-Mb circular chromosome with 2,680 protein-coding genes identified. Sequencing of sulfonate-metabolizing anaerobes is key for understanding sulfonate degradation and its role in the sulfur cycle.

scholarly journals Complete Genome Sequence of Methylobacterium sp. Strain AMS5, an Isolate from a Soybean Stem

2016 ◽  
Vol 4 (2) ◽  
Author(s):  
Tomoyuki Minami ◽  
Yoshiyuki Ohtsubo ◽  
Mizue Anda ◽  
Yuji Nagata ◽  
Masataka Tsuda ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Molecular Mechanisms

Nonrhizobial Methylobacterium spp. inhabit the phyllosphere of a wide variety of plants. We report here the complete genome sequence of Methylobacterium sp. AMS5, which was isolated from a soybean stem. The information is useful for understanding the molecular mechanisms of the interaction between nonrhizobial Methylobacterium spp. and plants.

scholarly journals Complete genome sequence of Sphingomonas paucimobilis AIMST S2, a xenobiotic-degrading bacterium

2019 ◽  
Vol 6 (1) ◽  
Author(s):  
Suganniiya K. Ravintheran ◽  
Sumitra Sivaprakasam ◽  
Stella Loke ◽  
Su Yin Lee ◽  
Ravichandran Manickam ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Molecular Mechanisms ◽  
Sphingomonas Paucimobilis ◽  
Growth Promoters ◽  
Illumina Hiseq ◽  
Degrading Bacterium ◽  
Long Reads ◽  
Gene Expression Studies

AbstractComplete genomes of xenobiotic-degrading microorganisms provide valuable resources for researchers to understand molecular mechanisms involved in bioremediation. Despite the well-known ability of Sphingomonas paucimobilis to degrade persistent xenobiotic compounds, a complete genome sequencing is lacking for this organism. In line with this, we report the first complete genome sequence of Sphingomonas paucimobilis (strain AIMST S2), an organophosphate and hydrocarbon-degrading bacterium isolated from oil-polluted soil at Kedah, Malaysia. The genome was derived from a hybrid assembly of short and long reads generated by Illumina HiSeq and MinION, respectively. The assembly resulted in a single contig of 4,005,505 bases which consisted of 3,612 CDS and 56 tRNAs. An array of genes involved in xenobiotic degradation and plant-growth promoters were identified, suggesting its’ potential role as an effective microorganism in bioremediation and agriculture. Having reported the first complete genome of the species, this study will serve as a stepping stone for comparative genome analysis of Sphingomonas strains and other xenobiotic-degrading microorganisms as well as gene expression studies in organophosphate biodegradation.

scholarly journals Complete Genome Sequence of the Subsurface, Mesophilic Sulfate-Reducing Bacterium Desulfovibrio aespoeensis Aspo-2

2014 ◽  
Vol 2 (3) ◽  
Author(s):  
K. Pedersen ◽  
A. Bengtsson ◽  
J. Edlund ◽  
L. Rabe ◽  
T. Hazen ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Sulfate Reducing

scholarly journals Complete genome sequence of the thermophilic sulfate-reducing ocean bacterium Thermodesulfatator indicus type strain (CIR29812T)

2012 ◽  
Vol 6 (2) ◽  
pp. 155-164 ◽  
Author(s):  
Iain Anderson ◽  
Elizabeth Saunders ◽  
Alla Lapidus ◽  
Matt Nolan ◽  
Susan Lucas ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Type Strain ◽  
Sulfate Reducing

scholarly journals Complete genome sequence of the sulfate-reducing firmicute Desulfotomaculum ruminis type strain (DLT)

2012 ◽  
Vol 7 (2) ◽  
pp. 294-309 ◽  
Author(s):  
Stefan Spring ◽  
Michael Visser ◽  
Megan Lu ◽  
Alex Copeland ◽  
Alla Lapidus ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Type Strain ◽  
Sulfate Reducing
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