scholarly journals Draft Genome Assembly of the False Spider Mite Brevipalpus yothersi

2019 ◽  
Vol 8 (6) ◽  
Author(s):  
Denise Navia ◽  
Valdenice M. Novelli ◽  
Stephane Rombauts ◽  
Juliana Freitas-Astúa ◽  
Renata Santos de Mendonça ◽  
...  
Keyword(s):  
Host Plant ◽  
Genome Assembly ◽  
Spider Mite ◽  
Draft Genome ◽  
Plant Viruses ◽  
Important Species ◽  
Content Type ◽  
Draft Genome Assembly ◽  
False Spider ◽  
False Spider Mite

The false spider mite Brevipalpus yothersi infests a broad host plant range and has become one of the most economically important species within the genus Brevipalpus. This phytophagous mite inflicts damage by both feeding on plants and transmitting plant viruses.

scholarly journals Erratum for Navia et al., “Draft Genome Assembly of the False Spider Mite Brevipalpus yothersi”

2019 ◽  
Vol 8 (27) ◽  
Author(s):  
Denise Navia ◽  
Valdenice M. Novelli ◽  
Stephane Rombauts ◽  
Juliana Freitas-Astúa ◽  
Renata Santos de Mendonça ◽  
...  
Keyword(s):  
Genome Assembly ◽  
Spider Mite ◽  
Draft Genome ◽  
Draft Genome Assembly ◽  
False Spider ◽  
False Spider Mite

scholarly journals Draft Genome Sequence of Bacillus marisflavi CK-NBRI-03, Isolated from Agricultural Soil

2020 ◽  
Vol 9 (7) ◽  
Author(s):  
Mayank Gupta ◽  
Puneet Singh Chauhan ◽  
Sudhir K. Sopory ◽  
Sneh L. Singla-Pareek ◽  
Nidhi Adlakha ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Genome Assembly ◽  
Agricultural Soil ◽  
Draft Genome ◽  
Uttar Pradesh ◽  
Draft Genome Sequence ◽  
Positive Bacterium ◽  
Gram Positive ◽  
Content Type ◽  
Draft Genome Assembly

Here, we report the 4.34-Mb draft genome assembly of Bacillus marisflavi CK-NBRI-03 (or P3), a Gram-positive bacterium, with an average G+C content of 48.66%. P3 was isolated from agricultural soil from the Badaun (midwestern plain zone) region of Uttar Pradesh, India.

scholarly journals Genome Sequence of Bacillus thuringiensis Strain MW, a Freshwater Isolate

2020 ◽  
Vol 9 (2) ◽  
Author(s):  
Alexander N. Williams ◽  
Kyle S. MacLea
Keyword(s):  
Bacillus Thuringiensis ◽  
Genome Sequence ◽  
Genome Assembly ◽  
Draft Genome ◽  
Content Type ◽  
Draft Genome Assembly ◽  
Freshwater Stream ◽  
Biological Pesticide ◽  
Thuringiensis Strain

Bacillus thuringiensis is an agriculturally significant bacterium and common biological pesticide. B. thuringiensis strain MW was isolated from a freshwater stream in Mont Vernon, NH, and sequenced. A draft genome assembly of 5,935,630 bp with a G+C content of 34.86% and an N 50 value of 1,154,949 bp was generated.

scholarly journals Draft Genome Sequence of Bradyrhizobium elkanii TnphoA 33, a Producer of Polyhydroxyalkanoates

2017 ◽  
Vol 5 (8) ◽  
Author(s):  
Erica M. Lopes ◽  
Luciano T. Kishi ◽  
Camila C. Fernandes ◽  
Fernanda Larozza Paganelli ◽  
Lucia M. C. Alves ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Genome Assembly ◽  
Draft Genome ◽  
Open Reading Frames ◽  
Draft Genome Sequence ◽  
Nitrogen Fixing ◽  
Content Type ◽  
Draft Genome Assembly ◽  
Bradyrhizobium Elkanii ◽  
Reading Frames

ABSTRACT The genus Bradyrhizobium comprises bacteria with the ability to form nitrogen-fixing symbioses with legumes. They are of great interest in agriculture, as well as for the production of biopolymers such as polyhydroxyalkanoates. Here, we report the draft genome assembly of Bradyrhizobium elkanii TnphoA 33 comprising 9 Mb, 1,124 contigs, and 9,418 open reading frames.

scholarly journals Draft Genome Assembly of the Entomopathogenic Bacterium Photorhabdus luminescens subsp. sonorensis Caborca

2019 ◽  
Vol 8 (36) ◽  
Author(s):  
Duy An Duong ◽  
Patricia Espinosa-Artiles ◽  
Rousel A. Orozco ◽  
István Molnár ◽  
S. Patricia Stock
Keyword(s):  
Secondary Metabolism ◽  
Genome Assembly ◽  
Draft Genome ◽  
Gene Clusters ◽  
Insect Species ◽  
Photorhabdus Luminescens ◽  
Putative Gene ◽  
Content Type ◽  
Draft Genome Assembly ◽  
Wide Range

Photorhabdus luminescens subsp. sonorensis strain Caborca is an entomopathogenic bacterium with a dual lifestyle, namely, as a mutualist of the Heterorhabditis sonorensis nematode and a pathogen to a wide range of insect species. The genome assembly, in 231 contigs, is 5.2 Mbp long and includes 25 putative gene clusters for secondary metabolism.

scholarly journals Draft Genome Assembly of the Sheep Scab Mite, Psoroptes ovis

2018 ◽  
Vol 6 (16) ◽  
pp. e00265-18 ◽  
Author(s):  
Stewart T. G. Burgess ◽  
Kathryn Bartley ◽  
Edward J. Marr ◽  
Harry W. Wright ◽  
Robert J. Weaver ◽  
...  
Keyword(s):  
Genome Assembly ◽  
De Novo ◽  
Gene Prediction ◽  
Draft Genome ◽  
Psoroptes Ovis ◽  
Protein Coding ◽  
Content Type ◽  
Sheep Scab ◽  
Draft Genome Assembly ◽  
Intense Pruritus

ABSTRACT Sheep scab, caused by infestation with Psoroptes ovis, is highly contagious, results in intense pruritus, and represents a major welfare and economic concern. Here, we report the first draft genome assembly and gene prediction of P. ovis based on PacBio de novo sequencing. The ∼63.2-Mb genome encodes 12,041 protein-coding genes.

scholarly journals High-Quality Draft Genome Sequence of the Causal Agent of the Current Panama Disease Epidemic

2019 ◽  
Vol 8 (36) ◽  
Author(s):  
Rachel J. Warmington ◽  
William Kay ◽  
Aaron Jeffries ◽  
Paul O’Neill ◽  
Audrey Farbos ◽  
...  
Keyword(s):  
Fusarium Oxysporum ◽  
Genome Assembly ◽  
Draft Genome ◽  
Vegetative Compatibility Group ◽  
High Quality ◽  
Panama Disease ◽  
Content Type ◽  
Draft Genome Assembly ◽  
Compatibility Group ◽  
Race 4

We present a high-quality draft genome assembly for Fusarium oxysporum f. sp. cubense tropical race 4 (Fusarium odoratissimum), assembled from PacBio reads and consisting of 15 contigs with a total assembly size of 48.59 Mb. This strain appears to belong to vegetative compatibility group complex 01213/16.

scholarly journals Draft Genome Sequence ofEnterobactersp. Strain EA-1, an Electrochemically Active Microorganism Isolated from Tropical Sediment

2018 ◽  
Vol 6 (9) ◽  
Author(s):  
Lucinda E. Doyle ◽  
Rohan B. H. Williams ◽  
Scott A. Rice ◽  
Enrico Marsili ◽  
Federico M. Lauro
Keyword(s):  
East Asia ◽  
Genome Assembly ◽  
Draft Genome ◽  
Genome Comparison ◽  
Whole Genome ◽  
Content Type ◽  
Draft Genome Assembly ◽  
Electrochemically Active ◽  
Active Bacterium ◽  
Whole Genome Comparison

ABSTRACTEnterobactersp. strain EA-1 is an electrochemically active bacterium isolated from tropical sediment in Singapore. Here, the annotated draft genome assembly of the bacterium is reported. Whole-genome comparison indicates thatEnterobactersp. EA-1, along with a previously sequencedEnterobacterisolate from East Asia, forms a distinct clade within theEnterobactergenus.

scholarly journals Improved Draft Genome Sequence of a Monoteliosporic Culture of the Karnal Bunt (Tilletia indica) Pathogen of Wheat

2018 ◽  
Vol 6 (20) ◽  
Author(s):  
Anil Kumar ◽  
Pallavi Mishra ◽  
Ranjeet Maurya ◽  
A. K. Mishra ◽  
Vijai K. Gupta ◽  
...  
Keyword(s):  
Genome Size ◽  
Genome Sequence ◽  
Genome Assembly ◽  
Fungal Pathogen ◽  
Draft Genome ◽  
Karnal Bunt ◽  
Tilletia Indica ◽  
Content Type ◽  
Previous Version ◽  
Draft Genome Assembly

ABSTRACT Karnal bunt of wheat is an internationally quarantined fungal pathogen disease caused by Tilletia indica and affects the international commercial seed trade of wheat. We announce here the first improved draft genome assembly of a monoteliosporic culture of the Tilletia indica fungus, consisting of 787 scaffolds with an approximate total genome size of 31.83 Mbp, which is more accurate and near to complete than the previous version.

scholarly journals Genome Sequence of a California Isolate of Fusarium oxysporum f. sp. lycopersici Race 3, a Fungus Causing Wilt Disease on Tomato

2019 ◽  
Vol 8 (15) ◽  
Author(s):  
Peter M. Henry ◽  
Michelle Stueven ◽  
Sampson Li ◽  
Eugene M. Miyao ◽  
Thomas R. Gordon ◽  
...  
Keyword(s):  
Fusarium Oxysporum ◽  
Genome Assembly ◽  
Draft Genome ◽  
Gc Content ◽  
Wilt Disease ◽  
Read Coverage ◽  
High Quality ◽  
Content Type ◽  
Draft Genome Assembly ◽  
Important Disease

Fusarium wilt of tomato, caused by the soilborne fungus Fusarium oxysporum f. sp. lycopersici, is an increasingly important disease of tomato. This paper reports the high-quality draft genome assembly of F. oxysporum f. sp. lycopersici isolate D11 (race 3), which consists of 39 scaffolds with 57,281,978 bp (GC content, 47.5%), an N 50 of 4,408,267 bp, a mean read coverage of 99.8×, and 17,682 predicted genes.

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