scholarly journals Ecogenomics of Groundwater Phages Suggests Niche Differentiation Linked to Specific Environmental Tolerance

mSystems ◽  
2021 ◽  
Vol 6 (3) ◽  
Author(s):  
Ankita Kothari ◽  
Simon Roux ◽  
Hanqiao Zhang ◽  
Anatori Prieto ◽  
Drishti Soneja ◽  
...  
Keyword(s):  
Niche Differentiation ◽  
Environmental Tolerance ◽  
Extrachromosomal Elements ◽  
Selective Sequencing

To our knowledge, this is the first study to identify the bacteriophage distribution in a groundwater ecosystem shedding light on their prevalence and distribution across metal-contaminated and background sites. Our study is uniquely based on selective sequencing of solely the extrachromosomal elements of a microbiome followed by analysis for viral signatures, thus establishing a more focused approach for phage identifications.

Environmental Tolerance, Heterogeneity, and the Evolution of Reversible Plastic Responses

2005 ◽  
Vol 166 (3) ◽  
pp. 339
Author(s):  
Gabriel ◽  
Luttbeg ◽  
Sih ◽  
Tollrian
Keyword(s):  
Environmental Tolerance ◽  
Plastic Responses

scholarly journals Non-Conventional Metal Ion Cofactor Requirement of Dinoflagellate Alkaline Phosphatase and Translational Regulation by Phosphorus Limitation

2019 ◽  
Vol 7 (8) ◽  
pp. 232 ◽  
Author(s):  
Xin Lin ◽  
Chentao Guo ◽  
Ling Li ◽  
Tangcheng Li ◽  
Senjie Lin
Keyword(s):  
Alkaline Phosphatase ◽  
Metal Ion ◽  
Translational Regulation ◽  
Organic Phosphorus ◽  
Niche Differentiation ◽  
Phosphorus Limitation ◽  
Marine Phytoplankton ◽  
Phosphate Limitation ◽  
Dissolved Organic Phosphorus ◽  
Metal Cofactor

Alkaline phosphatase (AP) enables marine phytoplankton to utilize dissolved organic phosphorus (DOP) when dissolved inorganic phosphate (DIP) is depleted in the ocean. Dinoflagellate AP (Dino-AP) represents a newly classified atypical type of AP, PhoAaty. Despite While being a conventional AP, PhoAEC is known to recruit Zn2+ and Mg2+ in the active center, and the cofactors required by PhoAaty have been contended and remain unclear. In this study, we investigated the metal ion requirement of AP in five dinoflagellate species. After AP activity was eliminated by using EDTA to chelate metal ions, the enzymatic activity could be recovered by the supplementation of Ca2+, Mg2+ and Mn2+ in all cases but not by that of Zn2+. Furthermore, the same analysis conducted on the purified recombinant ACAAP (AP of Amphidinium carterae) verified that the enzyme could be activated by Ca2+, Mg2+, and Mn2+ but not Zn2+. We further developed an antiserum against ACAAP, and a western blot analysis using this antibody showed a remarkable up-regulation of ACAAP under a phosphate limitation, consistent with elevated AP activity. The unconventional metal cofactor requirement of Dino-AP may be an adaptation to trace metal limitations in the ocean, which warrants further research to understand the niche differentiation between dinoflagellates and other phytoplankton that use Zn–Mg AP in utilizing DOP.

Ultra-stable water-dispersive perovskite QDs encapsulated by triple siloxane coupling agent system with different hydrophilic/ hydrophobic properties

2021 ◽  
Author(s):  
Bingfeng Shi ◽  
Jianhua Lv ◽  
Ying Liu ◽  
Yang Xiao ◽  
Changli Lü
Keyword(s):  
Quantum Dots ◽  
Coupling Agent ◽  
Polar Solvent ◽  
Hydrophobic Properties ◽  
Agent System ◽  
Environmental Tolerance ◽  
Perovskite Quantum Dots ◽  
Improve Stability

Driven by the instability of perovskite quantum dots (PQDs), different encapsulation techniques are used to improve stability of PQDs. However, further improvements in the extreme environmental tolerance and polar solvent...

Habitat use and the coexistence of the sika deer and the Japanese serow, sympatric ungulates from Mt. Asama, central Japan

Mammalia ◽  
2020 ◽  
Vol 84 (6) ◽  
pp. 503-511
Author(s):  
Hayato Takada ◽  
Riki Ohuchi ◽  
Haruko Watanabe ◽  
Risako Yano ◽  
Risako Miyaoka ◽  
...  
Keyword(s):  
Habitat Use ◽  
Sika Deer ◽  
Cervus Nippon ◽  
Niche Differentiation ◽  
Ecological Niches ◽  
Dwarf Bamboo ◽  
Central Japan ◽  
Habitat Mosaic ◽  
The Japanese Archipelago ◽  
Japanese Serow

AbstractDifferential resource use allows for diverse species to specialize in ecological niches and thus coexist in a particular area. In the Japanese archipelago, increasing sika deer (Cervus nippon, Temminck 1836) densities have excluded the Japanese serow (Capricornis crispus, Temminck 1836), but in places where deer population densities are low, the two species coexist. We wanted to better understand their habitats and how these two ungulates manage to coexist. We evaluated the role of habitat use in the coexistence of these two sympatric ungulates on Mt. Asama, central Japan. Deer frequently used the dwarf bamboo-rich communities in autumn and winter, and their habitat use was not associated with topography. Serows frequently used deciduous broadleaf shrub-rich communities and steep slopes throughout the year. Consequently, their habitat use was significantly different in terms of vegetation and topography. Niche breadth suggests that deer tend to be generalists, whereas serows tend to be specialists. Niche differentiation in habitat use between deer and serows may make the coexistence of these similarly sized ungulates possible in Japanese mountainous zones. Therefore, the fine-grained habitat mosaic of different vegetation and topography areas might be the underlying feature that allows the coexistence of these two species.

scholarly journals Niches, rather than neutrality, structure a grassland pioneer guild

2005 ◽  
Vol 272 (1570) ◽  
pp. 1357-1364 ◽  
Author(s):  
Lindsay A Turnbull ◽  
Liz Manley ◽  
Mark Rees
Keyword(s):  
Seed Size ◽  
Adult Stage ◽  
Niche Differentiation ◽  
Competitive Dynamics ◽  
Similar Species ◽  
Adult Density ◽  
Pioneer Species ◽  
Trade Offs ◽  
Very High ◽  
Early Establishment

Pioneer species are fast-growing, short-lived gap exploiters. They are prime candidates for neutral dynamics because they contain ecologically similar species whose low adult density is likely to cause widespread recruitment limitation, which slows competitive dynamics. However, many pioneer guilds appear to be differentiated according to seed size. In this paper, we compare predictions from a neutral model of community structure with three niche-based models in which trade-offs involving seed size form the basis of niche differentiation. We test these predictions using sowing experiments with a guild of seven pioneer species from chalk grassland. We find strong evidence for niche structure based on seed size: specifically large-seeded species produce fewer seeds but have a greater chance of establishing on a per-seed basis. Their advantage in establishment arises because there are more microsites suitable for their germination and early establishment and not directly through competition with other seedlings. In fact, seedling densities of all species were equally suppressed by the addition of competitors' seeds. By the adult stage, despite using very high sowing densities, there were no detectable effects of interspecific competition on any species. The lack of interspecific effects indicates that niche differentiation, rather than neutrality, prevails.

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