scholarly journals Long Time Evolutionary Dynamics of Phenotypically Structured Populations in Time-Periodic Environments

2018 ◽  
Vol 50 (5) ◽  
pp. 5537-5568 ◽  
Author(s):  
Susely Figueroa Iglesias ◽  
Sepideh Mirrahimi
2019 ◽  
Vol 80 (3) ◽  
pp. 775-807 ◽  
Author(s):  
Aleksandra Ardaševa ◽  
Robert A. Gatenby ◽  
Alexander R. A. Anderson ◽  
Helen M. Byrne ◽  
Philip K. Maini ◽  
...  

Abstract Living species, ranging from bacteria to animals, exist in environmental conditions that exhibit spatial and temporal heterogeneity which requires them to adapt. Risk-spreading through spontaneous phenotypic variations is a known concept in ecology, which is used to explain how species may survive when faced with the evolutionary risks associated with temporally varying environments. In order to support a deeper understanding of the adaptive role of spontaneous phenotypic variations in fluctuating environments, we consider a system of non-local partial differential equations modelling the evolutionary dynamics of two competing phenotype-structured populations in the presence of periodically oscillating nutrient levels. The two populations undergo heritable, spontaneous phenotypic variations at different rates. The phenotypic state of each individual is represented by a continuous variable, and the phenotypic landscape of the populations evolves in time due to variations in the nutrient level. Exploiting the analytical tractability of our model, we study the long-time behaviour of the solutions to obtain a detailed mathematical depiction of the evolutionary dynamics. The results suggest that when nutrient levels undergo small and slow oscillations, it is evolutionarily more convenient to rarely undergo spontaneous phenotypic variations. Conversely, under relatively large and fast periodic oscillations in the nutrient levels, which bring about alternating cycles of starvation and nutrient abundance, higher rates of spontaneous phenotypic variations confer a competitive advantage. We discuss the implications of our results in the context of cancer metabolism.


2013 ◽  
Vol 15 ◽  
pp. 122-130 ◽  
Author(s):  
György Barabás ◽  
Annette Ostling

2004 ◽  
Vol 15 (1) ◽  
pp. 55-77 ◽  
Author(s):  
WALTER ALLEGRETTO ◽  
YANPING LIN ◽  
SHUQING MA

In this paper we study a nonlocal parabolic/elliptic system which models thermistor behaviour in cases where heat losses to the surrounding gas play a significant role. The existence of time periodic solutions for the system is established through Faedo-Galerkin approximations and the Leray–Schauder degree theory. We show that for the small gas pressure case, the temperature of the time periodic solutions is positive. Moreover we consider the long time behaviour of the system and prove the existence of a uniform attractor. Finally, the finite dimensionality of the attractor is discussed.


mSystems ◽  
2020 ◽  
Vol 5 (5) ◽  
Author(s):  
Zhiqiu Yin ◽  
Si Zhang ◽  
Yi Wei ◽  
Meng Wang ◽  
Shuangshuang Ma ◽  
...  

The taxonomic position of P. shigelloides has been the subject of debate for a long time, and until now, the evolutionary dynamics and pathogenesis of P. shigelloides were unclear. In this study, pan-genome analysis indicated extensive genetic diversity and the presence of large and variable gene repertoires. Our results revealed that horizontal gene transfer was the focal driving force for the genetic diversity of the P. shigelloides pan-genome and might have contributed to the emergence of novel properties. Vibrionaceae and Aeromonadaceae were found to be the predominant donor taxa for horizontal genes, which might have caused the taxonomic confusion historically. Comparative genomic analysis revealed the potential of P. shigelloides to cause intestinal and invasive diseases. Our results could advance the understanding of the evolution and pathogenesis of P. shigelloides, particularly in elucidating the role of horizontal gene transfer and investigating virulence-related elements.


Paleobiology ◽  
1995 ◽  
Vol 21 (2) ◽  
pp. 153-178 ◽  
Author(s):  
Peter J. Wagner

Cladograms predict the order in which fossil taxa appeared and, thus, make predictions about general patterns in the stratigraphic record. Inconsistencies between cladistic predictions and the observed stratigraphic record reflect either inadequate sampling of a clade's species, incomplete estimates of stratigraphic ranges, or homoplasy producing an incorrect phylogenetic hypothesis. A method presented in this paper attempts to separate the effects of homoplasy from the effects of inadequate sampling. Sampling densities of individual species are used to calculate confidence intervals on their stratigraphic ranges. The method uses these confidence intervals to test the order of branching predicted by a cladogram. The Lophospiridae (“Archaeogastropoda”) of the Ordovician provide a useful test group because the clade has a good fossil record and it produced species over a long time. Confidence intervals reject several cladistic hypotheses that postulate improbable “ghost lineages.” Other hypotheses are acceptable only with explicit ancestor-descendant relationships. The accepted cladogram is the shortest one that stratigraphic data cannot reject. The results caution against evaluating phylogenetic hypotheses of fossil taxa without considering both stratigraphic data and the possible presence of ancestral species, as both factors can affect interpretations of a clade's evolutionary dynamics and its patterns of morphologic evolution.


2009 ◽  
Vol 5 (12) ◽  
pp. e1000615 ◽  
Author(s):  
Charles G. Nathanson ◽  
Corina E. Tarnita ◽  
Martin A. Nowak

2018 ◽  
Author(s):  
David Hathcock ◽  
Steven H. Strogatz

Evolutionary graph theory models the effects of natural selection and random drift on structured populations of mutant and non-mutant individuals. Recent studies have shown that fixation times, which determine the rate of evolution, often have right-skewed distributions. Little is known, however, about how these distributions and their skew depend on mutant fitness. Here we calculate the fitness dependence of the fixation-time distribution for the Moran Birth-death process in populations modeled by two extreme networks: the complete graph and the one-dimensional ring lattice, each of which admits an exact solution in the limit of large network size. We find that with non-neutral fitness, the Moran process on the ring has normally distributed fixation times, independent of the relative fitness of mutants and non-mutants. In contrast, on the complete graph, the fixation-time distribution is a weighted convolution of two Gumbel distributions, with a weight depending on the relative fitness. When fitness is neutral, however, the Moran process has a highly skewed fixation-time distribution on both the complete graph and the ring. In this sense, the case of neutral fitness is singular. Even on these simple network structures, the fixation-time distribution exhibits rich fitness dependence, with discontinuities and regions of universality. Applications of our methods to a multi-fitness Moran model, times to partial fixation, and evolution on random networks are discussed.


2019 ◽  
Author(s):  
Alison F. Feder ◽  
Pleuni S. Pennings ◽  
Joachim Hermisson ◽  
Dmitri A. Petrov

AbstractHigh rates of migration between subpopulations result in little population differentiation in the long-term neutral equilibrium. However, in the short-term, even very abundant migration may not be enough for subpopulations to equilibrate immediately. In this study, we investigate dynamical patterns of short-term population differentiation in adapting populations via stochastic and analytical modeling through time. We characterize a regime in which selection and migration interact to create non-monotonic patterns of the population differentiation statistic FST when migration is weaker than selection, but stronger than drift. We demonstrate how these patterns can be leveraged to estimate high migration rates that would lead to panmixia in the long term equilibrium using an approximate Bayesian computation approach. We apply this approach to estimate fast migration in a rapidly adapting intra-host Simian-HIV population sampled from different anatomical locations. Notably, we find differences in estimated migration rates between different compartments, all above Nem = 1. This work demonstrates how studying demographic processes on the timescale of selective sweeps illuminates processes too fast to leave signatures on neutral timescales.


2018 ◽  
Author(s):  
Stefano Masier ◽  
Dries Bonte

AbstractDispersal evolution impacts the fluxes of individuals and hence, connectivity in metapopulations. Connectivity is therefore decoupled from the structural connectedness of the patches within the spatial network. Because of demographic feedbacks, local selection can additionally steer the evolution of other life history traits. We investigated how different levels of connectedness affect dispersal and life history evolution by varying the interpatch distance in replicated experimental metapopulations of the two-spotted spider. We implemented a shuffling treatment to separate local- and metapopulation-level selection.With lower metapopulation connectedness, an increased starvation resistance and delayed dispersal evolved. Intrinsic growth rates evolved at the local level by transgenerational plasticity or epigenetic processes. Changes in patch connectedness thus induce the genetic and non-genetic evolution of dispersal costs and demographic traits at both the local and metapopulation level. These trait changes are anticipated to impact metapopulations eco-evolutionary dynamics, and hence, the persistence and performance of spatially structured populations.


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