Paranephelius (Asteraceae: Liabeae): A case study in high-elevation hybridization and taxonomic insights

Paranephelius Poepp. (Liabeae: Asteraceae) is a genus, here comprised of three species confined to high-elevation Andean habitats from 3°–25°S latitude from northern Peru to northern Argentina. In a prior investigation, sequence data was analyzed from samples throughout the range of the genus to evaluate the morphological variation used in delineating species. This detailed sampling allowed for molecular studies at a fine geographic scale. Within Paranephelius, genetic divergence is low, and not adequate to fully resolve phylogenetic relationships at the species level. Two genetically and morphologically recognizable genomes were reveled in northern Peru; these correspond to P. ovatus Wedd. and P. uniflorus Poepp., respectively. Several accessions possess sequences representing putative hybrids between these two species. These putative hybrids have caused taxonomic confusion in establishing species boundaries in Paranephelius. The molecular analysis suggested that P. asperifolius (Muschl.) H. Rob. & Brettell, distributed in Bolivia and northwestern Argentina, is related to P. ovatus, while it most closely resembles P. uniflorus. Species that have changed status include, P. ferreyrae H. Rob., here within the parameters of P. uniflorus; and P. jelskii (Hieron.) H. Rob. & Brettell, P. bullatus A. Gray ex Wedd., and P. wurdackii H. Rob. are here within parameters of P. ovatus. This study is not intended to be a monograph, but does includes a key to species, descriptions, illustrations, and citation of specimens examined.

Flora of Singapore precursors, 26: The genus Maesa (Primulaceae) in Singapore and clarification of Maesa ramentacea in Malesia

Two species of Maesa are recorded for Singapore: the scrambling species M. sumatrana Scheff. found in the Central Catchment area, and the small tree taxon M. leptobotrya Hance found primarily in the Bukit Timah area. Both species have traditionally been misidentified as the widespread species Maesa ramentacea (Roxb.) A.DC., and this taxonomic confusion is discussed; a key to the two species, descriptions and photographs are provided.

Revision of the species confused with “Nereis falsa” de Quatrefages, 1866 (Annelida, Nereididae)

Nereis falsa de Quatrefages, 1866 has been regarded as a cosmopolitan species, and several species described from different localities have been regarded as junior synonyms of N. falsa. The present study is an attempt to resolve the taxonomic confusion in N. falsa, which seems to contain several distinct species due to previous inappropriate synonymy, widely distributed in the Atlantic and eastern Pacific Oceans. For this purpose, the authors first propose the resurrection of the synonymy of N. falsa with Hediste diversicolor that was concluded during the 19th century but disregarded later. After the fixation of the identity of N. falsa sensu stricto, the authors re-evaluate the proper taxonomic status of species which have previously been confused with N. falsa. Type, topotype and non-type specimens were examined; most species are redescribed, and others are reinstated. Nereis splendida Grube, 1840 is a valid Mediterranean species, and a neotype is proposed; it includes the Mediterranean populations of what is currently regarded as N. falsa. Consequently, N. falsa is transferred to Hediste Malmgren, 1867, and some taxonomic comments are added for the latter genus and a key to species is also included. Nereis callaona Grube & Kröyer in Grube, 1857, N. marginata Grube & Örsted in Grube, 1857 and N. riisei Grube & Örsted in Grube, 1857 are restricted to tropical American shores and are all redescribed. Nereis pelagica lunulata Ehlers, 1901, formerly regarded as a junior synonym of N. falsa by Fauvel (1941), is redescribed and elevated in rank to species level. Nereis lucipeta Ehlers, 1908, formerly regarded as a junior synonym of N. splendida by Ehlers (1913) and of N. falsa by Fauvel (1919), is reinstated. Nereis occidentalis Hartman, 1945 is also redescribed. Furthermore, N. ambigua Treadwell, 1937, formerly regarded as a junior synonym of N. riisei by Monro (1933), deserves to be reinstated. Western Africa specimens recorded as N. falsa are newly described as N. mezianei sp. nov.

A Phylogenetic Investigation of the New Zealand Pteridaceae Ferns

<p>The fern family Pteridaceae is among the largest fern families in New Zealand. It comprises 17 native species among five genera. Traditionally the classification of Pteridaceae was based on morphological characters. The advent of molecular technology, now makes is possible to test these morphology-based classifications. The Pteridaceae has previously been subjected to phylogenetic analyses; however representatives from New Zealand and the South Pacific have never been well represented in these studies. This thesis research aimed to investigate the phylogenetic relationships of the New Zealand Pteridaceae, as well as, the phylogenetic relationships of the New Zealand species to their overseas relatives. The DNA sequences of several Chloroplast loci (e.g. trnL-trnF locus, rps4 and rps4-trnS IGS, atpB, and rbcL) were determined and the phylogenetic relationships of the New Zealand Pteridaceae and several species-specific question within the genus Pellaea and Adiantum were investigated. Results presented in this thesis confirm previously published phylogenetics of the Pteridaceae, which show the resolution of five major clades, i.e.,cryptogrammoids, ceratopteridoids, pteridoids, cheilanthoids, and the adiantoids. The addition of the New Zealand species revealed a possible South West Pacific groups formed by the respective genera, where New Zealand species were generally more related to one another than to overseas relatives. Within the New Zealand Pellaea, the analysis of the trnL-trnF locus sequence data showed that the morphologically-intermediate plants P. aff. falcata, responsible for taxonomic confusion, were more closely related to P. rotundifolia than to P. falcata. Furthermore, the species collected on the Kermadec Islands, previously thought to be P. falcata, are genetically distinct from the Australian P. falcata and they could constitute a new species. Adiantum hispidulum, which is polymorphic for two different hair types being used to distinguish them as different species, was also reinvestigated morphologically and molecularly. Morphological inspection of hairs revealed three hair types as opposed to the previous thought two, and furthermore, they correspond to three different trnL-trnF sequences haplotypes.</p>

A Phylogenetic Investigation of the New Zealand Pteridaceae Ferns

<p>The fern family Pteridaceae is among the largest fern families in New Zealand. It comprises 17 native species among five genera. Traditionally the classification of Pteridaceae was based on morphological characters. The advent of molecular technology, now makes is possible to test these morphology-based classifications. The Pteridaceae has previously been subjected to phylogenetic analyses; however representatives from New Zealand and the South Pacific have never been well represented in these studies. This thesis research aimed to investigate the phylogenetic relationships of the New Zealand Pteridaceae, as well as, the phylogenetic relationships of the New Zealand species to their overseas relatives. The DNA sequences of several Chloroplast loci (e.g. trnL-trnF locus, rps4 and rps4-trnS IGS, atpB, and rbcL) were determined and the phylogenetic relationships of the New Zealand Pteridaceae and several species-specific question within the genus Pellaea and Adiantum were investigated. Results presented in this thesis confirm previously published phylogenetics of the Pteridaceae, which show the resolution of five major clades, i.e.,cryptogrammoids, ceratopteridoids, pteridoids, cheilanthoids, and the adiantoids. The addition of the New Zealand species revealed a possible South West Pacific groups formed by the respective genera, where New Zealand species were generally more related to one another than to overseas relatives. Within the New Zealand Pellaea, the analysis of the trnL-trnF locus sequence data showed that the morphologically-intermediate plants P. aff. falcata, responsible for taxonomic confusion, were more closely related to P. rotundifolia than to P. falcata. Furthermore, the species collected on the Kermadec Islands, previously thought to be P. falcata, are genetically distinct from the Australian P. falcata and they could constitute a new species. Adiantum hispidulum, which is polymorphic for two different hair types being used to distinguish them as different species, was also reinvestigated morphologically and molecularly. Morphological inspection of hairs revealed three hair types as opposed to the previous thought two, and furthermore, they correspond to three different trnL-trnF sequences haplotypes.</p>

Taxonomic notes on desmids from the Netherlands IV, with a description of another five new species

From the Netherlands, five more desmid species giving rise to taxonomic confusion are described as new to science: Cosmarium neocrenatum, C. neonotabile, C. palatiniforme, C. regnesiforme and C. sphagnicoliforme. The affinity with similarly looking taxa is discussed.

Taxonomy notes and new occurrence data of four species of atyid shrimp (Crustacea: Decapoda: Atyidae) in Vietnam, all described from China

Freshwater shrimp of the family Atyidae De Haan, 1849 have been studied in Vietnam for more than a century. A total of 24 species of atyid shrimps from the genera Caridina H. Milne Edwards, 1837, Neocaridina Kubo, 1938, Atyopsis Chace, 1983 have been recorded from Vietnam. With 22 species, the majority are from the genus Caridina. In 2013, Karge and Klotz mentioned the occurrence of four yet undescribed species belonging to Paracaridina Liang, Guo &amp; Tang, 1999 in Vietnam without taxonomic details. In general, studies of freshwater atyids in Vietnam are limited and most Vietnamese taxa await a taxonomic revision. The available data do not fully reflect their estimated species diversity in the country and distribution data are deficient. Here, we focus on four species of atyid shrimps from two genera, viz. Caridina cantonensis Yu, 1938, C. lanceifrons Yu, 1936, C. serrata Stimpson, 1860 and Neocaridina palmata (Shen, 1948), all described from China and have been reported to occur in Vietnam. The previous reports on the occurrence of these species in Vietnam are largely unreliable due to taxonomic confusion. To contribute to the knowledge of these taxa, we provide the first verified distribution records of the four species in the country with some taxonomic remarks. This study shows the first taxonomically-verified distribution data of four atyid shrimp species originally described from China, but also reported from Vietnam, albeit under various species names and, in some cases, erroneously. These data allow the first meaningful discussion of the distribution in light of the reproductive strategy of these four species and, in conjunction with the taxonomic remarks, will contribute to the knowledge of these taxa. As a result of this research and data from previous studies, we now consider all four species as widespread and non-endemic, but land-locked (with a complete freshwater life cycle). In Vietnam, all four species are confined to the northern half of the country. Beyond Vietnam, we provide the first records for Caridina lanceifrons from southern Thailand, which suggests a major sampling gap in Indochina.

A karyotype study in two fish species belonging to Genus Neolissochilus found in Meghalaya, India

The karyomorphological study of two species of Mahseer belonging to the genus Neolissochilus, namely Neolissochilus hexagonolepis and N. hexastichus were carried out. The study revealed the basic chromosome number in both the Masheer species was observed to be 100. However, the karyotype formula number varied among the species. N. hexagonolepis had a diploid chromosome number of 42 metacentric (m), 20 submetacentric (sm), 8 subtelocentric (st) and 30 telocentric (t) and N. hexastichus had a karyotypic formula of 32 metacentric (m), 22 submetacentric (sm), 4 subtelocentric (st) and 42 telocentric (t). This finding removed taxonomic confusion due to the differences in the chromosome number, the morphology of the chromosomes and chromosome formula between the two fish species of the genus and helped in distinctive and unblemished identification of the two species belonging to the genus Neolissochilus from Meghalaya, though they have a morphological similarity.

Final Destination? Pinpointing Hyella disjuncta sp. nov. PCC 6712 (Cyanobacteria) Based on Taxonomic Aspects, Multicellularity, Nitrogen Fixation and Biosynthetic Gene Clusters

Unicellular cyanobacteria inhabit a wide range of ecosytems and can be found throughout the phylum offering space for taxonomic confusion. One example is strain PCC 6712 that was described as Chlorogloea sp. (Nostocales) and later assigned to the genus Chroococcidiopsis (Chroococcidiopsidales). We now show that this strain belongs to the order Pleurocapsales and term it Hyella disjuncta based on morphology, genome analyses and 16S-23S ITS rRNA phylogeny. Genomic analysis indicated that H. disjuncta PCC 6712 shared about 44.7% orthologue genes with its closest relative H. patelloides. Furthermore, 12 cryptic biosynthetic gene clusters (BGCs) with potential bioactivity, such as a mycosporine-like amino acid BGC, were detected. Interestingly, the full set of nitrogen fixation genes was found in H. disjuncta PCC 6712 despite its inability to grow on nitrogen-free medium. A comparison of genes responsible for multicellularity was performed, indicating that most of these genes were present and related to those found in other cyanobacterial orders. This is in contrast to the formation of pseudofilaments—a main feature of the genus Hyella—which is weakly expressed in H. disjuncta PCC 6712 but prominent in Hyella patelloides LEGE 07179. Thus, our study pinpoints crucial but hidden aspects of polyphasic cyanobacterial taxonomy.

The early diversification of ray-finned fishes (Actinopterygii): hypotheses, challenges and future prospects

Actinopterygii are the most speciose living vertebrate clade, and study of fossil members during their Palaeozoic rise to dominance has a long history of descriptive work. Although research interest into Palaeozoic actinopterygians has increased in recent years, broader patterns of diversity and diversity dynamics remain critically understudied. Past studies have investigated macroevolutionary trends in Palaeozoic actinopterygians in a piecemeal fashion, variably using existing compendia of vertebrates or literature-based searches, and there is no comprehensive occurrence-based dataset of actinopterygians spanning the whole of the Palaeozoic. Past studies typically show low levels of diversity in the Devonian with a substantial rise in the early Carboniferous in the aftermath of the end-Devonian mass extinction. However there are unresolved patterns reported for the later Carboniferous and Permian. In large part, these conflicts span from a lack of publicly-available occurrence data: actinopterygians are majorly underrepresented in the Paleobiology Database (PBDB), for example, obscuring patterns of diversity through time. This is exacerbated by major taxonomic problems pervading the Palaeozoic actinopterygian record. Innumerable taxa are lumped into wide-ranging families and poorly-formulated genera, with a vast number of described species concentrated in several particularly problematic ‘waste-basket’ genera. This taxonomic confusion feeds into a limited understanding of phylogenetic relationships. There is also a heavy sampling bias towards Europe and North America, with other regions underrepresented despite yielding important occurrences. Scrutiny of the extent to which spatial biases influence the record is lacking, as is research on other forms of bias. Low richness in some time periods may be linked to geological biases, while the effect of taphonomic biases on Palaeozoic actinopterygians have not yet been investigated. Efforts are already underway to both redescribe poorly defined taxa and describe taxa from underrepresented regions, helping address taxonomic issues and accuracy of occurrence data. New methods of sampling standardisation utilising up-to-date occurrence databases will be critical in teasing apart biological changes in diversity from those resulting from bias. Lastly, continued phylogenetic work will enable the use of phylogenetic comparative methods to elucidate the origins of actinopterygian biogeography and subsequent patterns of radiation throughout their rise to dominate aquatic faunas.