A genetic and molecular profile of third chromosome centric heterochromatin in Drosophila melanogaster

Genome ◽  
2005 ◽  
Vol 48 (4) ◽  
pp. 571-584 ◽  
Author(s):  
K A Fitzpatrick ◽  
D A Sinclair ◽  
S R Schulze ◽  
M Syrzycka ◽  
B M Honda
Keyword(s):  
Drosophila Melanogaster ◽  
Genome Sequencing ◽  
Dna Sequences ◽  
Centromeric Heterochromatin ◽  
Molecular Profile ◽  
Chromosome 3 ◽  
Unpublished Work ◽  
Sequencing Studies ◽  
Substantial Progress ◽  
Complementation Groups

In this review, we combine the results of our published and unpublished work with the published results of other laboratories to provide an updated map of the centromeric heterochromatin of chromosome 3 in Drosophila melanogaster. To date, we can identify more than 20 genes (defined DNA sequences with well-characterized functions and (or) defined genetic complementation groups), including at least 16 essential loci. With the ongoing emergence of data from genetic, cytological, and genome sequencing studies, we anticipate continued, substantial progress towards understanding the function, structure, and evolution of centric heterochromatin.Key words: heterochromatin, Drosophila, cytogenetics, genomics.

scholarly journals THIRD-CHROMOSOME MUTAGEN-SENSITIVE MUTANTS OF DROSOPHILA MELANOGASTER

Genetics ◽  
1981 ◽  
Vol 97 (3-4) ◽  
pp. 607-623 ◽  
Author(s):  
J B Boyd ◽  
M D Golino ◽  
K E S Shaw ◽  
C J Osgood ◽  
M M Green
Keyword(s):  
Drosophila Melanogaster ◽  
Genetic Map ◽  
Nitrogen Mustard ◽  
Chromosome 3 ◽  
Methyl Methanesulfonate ◽  
Dna Metabolism ◽  
Genetic Analyses ◽  
Chemical Mutagens ◽  
Complementation Groups ◽  
Biochemical Analyses

ABSTRACT A total of 34 third chromosomes of Drosophila melanogaster that render homozygous larvae hypersensitive to killing by chemical mutagens have been isolated. Genetic analyses have placed responsible mutations in more than eleven complementation groups. Mutants in three complementation groups are strongly sensitive to methyl methanesulfonate, those in one are sensitive to nitrogen mustard, and mutants in six groups are hypersensitive to both mutagens. Eight of the ten loci mapped fall within 15% of the genetic map that encompasses the centromere of chromosome 3. Mutants from four of the complementation groups are associated with moderate to strong meiotic effects in females. Preliminary biochemical analyses have implicated seven of these loci in DNA metabolism.

scholarly journals Genetic and Molecular Analysis of Essential Genes in Centromeric Heterochromatin of the Left Arm of Chromosome 3 in Drosophila melanogaster

2019 ◽  
Vol 9 (5) ◽  
pp. 1581-1595 ◽  
Author(s):  
Monika Syrzycka ◽  
Graham Hallson ◽  
Kathleen A. Fitzpatrick ◽  
Inho Kim ◽  
Shawn Cotsworth ◽  
...  
Keyword(s):  
Drosophila Melanogaster ◽  
Molecular Analysis ◽  
Essential Genes ◽  
Centromeric Heterochromatin ◽  
Chromosome 3

scholarly journals The organization and expression of the light gene, a heterochromatic gene of Drosophila melanogaster.

Genetics ◽  
1990 ◽  
Vol 125 (1) ◽  
pp. 129-140 ◽  
Author(s):  
R H Devlin ◽  
B Bingham ◽  
B T Wakimoto
Keyword(s):  
Drosophila Melanogaster ◽  
Dna Sequences ◽  
Molecular Mapping ◽  
Single Copy ◽  
Transcription Unit ◽  
Malpighian Tubules ◽  
Centromeric Heterochromatin ◽  
Chromosome 2 ◽  
Induced Mutations ◽  
Flanking Regions

Abstract The light (lt) gene is located in the centromeric heterochromatin of chromosome 2 of Drosophila melanogaster. This gene is necessary for normal levels of pigmentation in a number of adult and larval tissues and is required for viability. Hybrid dysgenic and X-ray induced mutations have been used to identify the gene and compare its organization to that of euchromatic genes. Molecular mapping of lt mutations and its major transcripts has shown that the lt gene is at least 17 kb. By injecting cosmid clones that include this region into lt mutant embryos, we have defined a 30-kb region that can transiently rescue the pigmentation defect in the Malpighian tubules. The major transcription unit of this gene is comprised of exons that are single copy. It is unusual in its organization in having a heterogeneous array of middle repetitive DNA sequences within its intronic and flanking regions.

scholarly journals GENETIC ANALYSIS OF THE ANTENNAPEDIA GENE COMPLEX (ANT-C) AND ADJACENT CHROMOSOMAL REGIONS OF DROSOPHILA MELANOGASTER. II. POLYTENE CHROMOSOME SEGMENTS 84A–84B1,2

Genetics ◽  
1980 ◽  
Vol 95 (2) ◽  
pp. 383-397
Author(s):  
R A Lewis ◽  
B T Wakimoto ◽  
R E Denell ◽  
T C Kaufman
Keyword(s):  
Drosophila Melanogaster ◽  
Genetic Analysis ◽  
Normal Development ◽  
Chromosome 3 ◽  
Gene Complex ◽  
Functional Sites ◽  
Complementation Groups ◽  
Chromosome Segments ◽  
New Alleles ◽  
New Mutations

ABSTRACT The existence of a gene complex in the proximal right arm of chromosome 3 of Drosophila melanogaster involved in the development of the head and thorax was originally suggested by the phenotypes of several dominant homoeotic mutations and their revertants. A screen for mutations utilizing Df(3R) AntpNS+R17 (proximally broken in salivary region 84B1,2) yielded, among 102 recovered mutations, 17 localized by deficiency mapping to the putative homoeotic cluster. These fell into four complementation groups, two of which were characterized by homoeotic phenotypes. To explore the limits of the Antennapedia gene complex (ANT-C) more proximally, a second screen has been undertaken utilizing Df(3R)Scr, a deficiency of 84A1-B1,2.——Of 2832 chromosomes screened, 21 bearing alterations localized to polytene interval 84A-84B1,2 have been recovered. Sixteen are recessive lethals, and five showing reduced viability display a visible phenotype in surviving individuals. Complementation and phenotypic analyses revealed four complementation groups proximal to those identified in the previous screen, including two new alleles of the recessive homoeotic mutation, proboscipedia (pb). Ten of the new mutations correspond to complementation groups defined previously in the Df(3R)AntpNS+R17 screen, four to the EbR11 group, two to the Scr group and four to the Antp group.——On the basis of the phenotypes of the 39 mutations localized to this region, plus their interactions with extant homoeotic mutations, we postulate that there are at least five functional sites comprising the ANT-C. Three have been demonstrated to he homoeotic in nature. The specific homoeotic transformations thus far observed suggest that these loci are critical for normal development of adult labial, maxillary and thoracic structures.

Genetic analysis of the second chromosome centromeric heterochromatin of Drosophila melanogaster

Genome ◽  
2003 ◽  
Vol 46 (3) ◽  
pp. 343-352 ◽  
Author(s):  
Alistair B Coulthard ◽  
Daniel F Eberl ◽  
Cecil B Sharp ◽  
Arthur J Hilliker
Keyword(s):  
Drosophila Melanogaster ◽  
Genetic Analysis ◽  
Centromeric Heterochromatin ◽  
Chromosome 2 ◽  
Lethal Mutant ◽  
Genetic Elements ◽  
Unpublished Work ◽  
Segregation Distorter ◽  
Mutant Phenotypes

Here we bring together our published and unpublished work with recent published findings of other laboratories to provide a revised map of the centromeric heterochromatin of chromosome 2 and descriptions of the 21 genetic elements therein. These elements consist of 16 vital loci, one male and one female sterile loci, one Minute locus, and two components of the Segregation Distorter system. Based on our latest analysis of the lethal mutant phenotypes of the vital genes, we have provided names for several genes that were previously known by their lethal number assignments.Key words: heterochromatin, Drosophila, cytogenetics.

scholarly journals GENETIC CHARACTERIZATION OF THE REGION BETWEEN 86F1,2 AND 87B15 ON CHROMOSOME 3 OF DROSOPHILA MELANOGASTER

Genetics ◽  
1981 ◽  
Vol 98 (4) ◽  
pp. 775-789
Author(s):  
J Gausz ◽  
H Gyurkovics ◽  
G Bencze ◽  
A A M Awad ◽  
J J Holden ◽  
...  
Keyword(s):  
Drosophila Melanogaster ◽  
Heat Shock ◽  
Genetic Characterization ◽  
Chromosome 3 ◽  
Gene Encoding ◽  
Lethal Mutations ◽  
Complementation Groups ◽  
Shock Locus ◽  
Chromosome Bands

ABSTRACT The region between 86F1,2 and 87B15 on chromosome 3 of Drosophila melanogaster, which contains about 27 polytene chromosome bands including the 87A7 heat-shock locus, has been screened for EMS-induced visible and lethal mutations. We have recovered 268 lethal mutations that fall into 25 complementation groups. Cytogenetic localization of the complementation groups by deficiency mapping is consistent with the notion that each band encodes a single genetic function. We have also screened for mutations at the 87A7 heat shock locus, using a chromosome that has only one copy of the gene encoding the 70,000 dalton heat-shock protein (hsp70). No lethal or visible mutations at 87A7 were identified from 10,719 mutagenized chromosomes, and no female-sterile mutations at 87A7 were recovered from the 1,520 chromosomes whose progeny were tested for female fertility. We found no evidence that a functional hsp70 gene is required for development under laboratory conditions.

scholarly journals LETHAL MUTATIONS FLANKING THE 68C GLUE GENE CLUSTER ON CHROMOSOME 3 OF DROSOPHILA MELANOGASTER

Genetics ◽  
1986 ◽  
Vol 112 (4) ◽  
pp. 785-802
Author(s):  
Madeline A Crosby ◽  
Elliot M Meyerowitz
Keyword(s):  
Drosophila Melanogaster ◽  
Gene Cluster ◽  
Xanthine Dehydrogenase ◽  
Complementation Group ◽  
Chromosome 3 ◽  
Relative Order ◽  
Lethal Mutations ◽  
Complementation Groups ◽  
Chromosome Bands ◽  
New Alleles

ABSTRACT We have conducted a genetic analysis of the region flanking the 68C glue gene cluster in Drosophila melanogaster by isolating lethal and semilethal mutations uncovered by deficiencies which span this region. Three different mutagens were used: ethyl methanesulfonate (EMS), ethyl nitrosourea (ENU) and diepoxybutane (DEB). In the region from 68A3 to 68C11, 64 lethal, semilethal, and visible mutations were recovered. These include alleles of 13 new lethal complementation groups, as well as new alleles of rotated, low xanthine dehydrogenase, lethal(3)517 and lethal(3)B76. Six new visible mutations from within this region were recovered on the basis of their reduced viability; all proved to be semiviable alleles of lethal complementation groups. No significant differences were observed in the distributions of lethals recovered using the three different mutagens. Each lethal was mapped on the basis of complementation with overlapping deficiencies; mutations that mapped within the same interval were tested for complementation, and the relative order of the lethal groups within each interval was determined by recombination. The cytological distribution of genes within the 68A3-68C11 region is not uniform: the region from 68A2,3 to 68B1,3 (seven to ten polytene chromosome bands) contains at least 13 lethal complementation groups and the mutation low xanthine dehydrogenase; the adjoining region from 68B1,3 to 68C5,6 (six to nine bands) includes the 68C glue gene cluster, but no known lethal or visible complementation groups; and the interval from 68C5,6 to 68C10,11 (three to five bands) contains at least three lethal complementation groups and the visible mutation rotated. The developmental stage at which lethality is observed was determined for a representative allele from each lethal complementation group.

scholarly journals Genetic Analysis of the Heterochromatin of Chromosome 3 in Drosophila Melanogaster. II. Vital Loci Identified through Ems Mutagenesis.

Genetics ◽  
1988 ◽  
Vol 120 (2) ◽  
pp. 519-532
Author(s):  
G E Marchant ◽  
D G Holm
Keyword(s):  
Drosophila Melanogaster ◽  
Genetic Analysis ◽  
Single Copy ◽  
Chromosome 3 ◽  
Temperature Sensitive ◽  
Chromosome 2 ◽  
Complementation Groups ◽  
Sensitive Allele ◽  
Interallelic Complementation ◽  
The Right

Abstract Chromosome 3 of Drosophila melanogaster contains the last major blocks of heterochromatin in this species to be genetically analyzed. Deficiencies of heterochromatin generated through the detachment of compound-3 chromosomes revealed the presence of vital loci in the heterochromatin of chromosome 3, but an extensive complementation analysis with various combinations of lethal and nonlethal detachment products gave no evidence of tandemly repeated vital genes in this region. These findings indicate that the heterochromatin of chromosome 3 is genetically similar to that of chromosome 2. A more thorough genetic analysis of the heterochromatic regions has been carried out using the chemical mutagen ethyl methanesulfonate (EMS). Seventy-five EMS-induced lethals allelic to loci uncovered by detachment-product deficiencies were recovered and tested for complementation. In total, 12 complementation groups were identified, ten in the heterochromatin to the left of the centromere and two to the right. All but two complementation groups in the left heterochromatic block could be identified as separate loci through deficiency mapping. The interallelic complementation observed between some EMS-induced lethals, as well as the recovery of a temperature-sensitive allele for each of the two loci, provided further evidence that single-copy, transcribed vital genes reside in the heterochromatin of chromosome 3. Cytological analysis of three detachment-product deficiencies provided evidence that at least some of the genes uncovered in this study are located in the most distal segments of the heterochromatin in both arms. This study provides a detailed genetic analysis of chromosome 3 heterochromatin and offers further information on the genetic nature and heterogeneity of Drosophila heterochromatin.

scholarly journals MUTATIONAL ANALYSIS OF THE REGION SURROUNDING THE 93D HEAT SHOCK LOCUS OF DROSOPHILA MELANOGASTER

Genetics ◽  
1984 ◽  
Vol 106 (2) ◽  
pp. 249-265
Author(s):  
Jym Mohler ◽  
Mary Lou Pardue
Keyword(s):  
Drosophila Melanogaster ◽  
Heat Shock ◽  
Mutational Analysis ◽  
Point Mutations ◽  
Γ Irradiation ◽  
Lethal Mutations ◽  
Complementation Groups ◽  
In Trans ◽  
Shock Locus ◽  
Shock Proteins

ABSTRACT The region containing subdivisions 93C, 93D and 93E on chromosome 3 of Drosophila melanogaster has been screened for visible and lethal mutations. Treatment with three mutagens, γ irradiation, ethyl methanesulfonate and diepoxybutane, has produced mutations that fall into 20 complementation groups, including the previously identified ebony locus. No point mutations affecting the heat shock locus in 93D were detected; however, a pair of deficiencies that overlap in the region of this locus was isolated. Flies heterozygous in trans for this pair of deficiencies are capable of producing all of the major heat shock puffs (except 93D) and the major heat shock proteins. In addition, these flies show recovery of normal protein synthesis following a heat shock.

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