Self-Organization in Prebiological Systems: A Model for the Origin of Genetic Information

Author(s):  
D. S. Rokhsar
2021 ◽  
pp. 35-50
Author(s):  
Franklin M. Harold

Organization is one of the most conspicuous features of cells. Not only are cells highly ordered (in the sense of regularity and predictability), but also they are organized: their order has purpose, or function. How does biological organization arise, and how is it transmitted from one generation to the next? A key element is genetic information encoded in DNA. Many scientists hold that DNA is the master molecule of life that prescribes all that cells are and do, and the general public has swallowed that doctrine whole. There is truth in this view of biological organization, inasmuch as genes do specify the chemical structure (and thereby the function) of proteins, nucleic acids, and (indirectly) many other biomolecules. But that is only part of an increasingly complex story. The higher levels of cell organization are not spelled out in the genes; they arise by self-organization, and are commonly transmitted to the next generation because the mother cell is architecturally continuous with its daughter. DNA provides an indispensable database, but does not direct the show. Organisms are better understood as complex interactive systems composed of genetically specified elements.


2005 ◽  
Vol 3 (6) ◽  
pp. 197-214 ◽  
Author(s):  
Eshel Ben-Jacob ◽  
Herbert Levine

Under natural growth conditions, bacteria can utilize intricate communication capabilities (e.g. quorum-sensing, chemotactic signalling and plasmid exchange) to cooperatively form (self-organize) complex colonies with elevated adaptability—the colonial pattern is collectively engineered according to the encountered environmental conditions. Bacteria do not genetically store all the information required for creating all possible patterns. Instead, additional information is cooperatively generated as required for the colonial self-organization to proceed. We describe how complex colonial forms (patterns) emerge through the communication-based singular interplay between individual bacteria and the colony. Each bacterium is, by itself, a biotic autonomous system with its own internal cellular informatics capabilities (storage, processing and assessment of information). These afford the cell plasticity to select its response to biochemical messages it receives, including self-alteration and the broadcasting of messages to initiate alterations in other bacteria. Hence, new features can collectively emerge during self-organization from the intracellular level to the whole colony. The cells thus assume newly co-generated traits and abilities that are not explicitly stored in the genetic information of the individuals.


Philosophies ◽  
2021 ◽  
Vol 6 (1) ◽  
pp. 3
Author(s):  
Naoki Sato

Traditionally, life has been thought improbable without assuming a special principle, such as vital power. Here, I try to understand organization of living systems in terms of a more rational and materialistic notion. I have introduced the notion of inhomogeneity, which is a novel interpretation of “negentropy”, and equivalent to “bound information”, according to the probabilistic interpretation of entropy. Free energy of metabolites is a labile inhomogeneity, whereas genetic information is a more stable inhomogeneity. Dynamic emergence can result from the conflict between two inhomogeneities, one labile and another stable, just like dialectic synthesis results from the conflict between thesis and antithesis. Life is a special type of dynamic emergence, which is coupled with reproduction mediated by genetic information. Biological membrane formation is taken as an example to formulate self-organization of biological systems through dynamic emergence. This system is ultimately driven by the Sun/Earth temperature difference, and is consistent with an increase in probability in the world. If we consider all entropy production related to life, such as degradation of materials and death of organisms, and ultimately the cooling of the Sun, probability always increases with the progress of living systems.


2009 ◽  
Vol 42 (19) ◽  
pp. 11
Author(s):  
MARY ELLEN SCHNEIDER
Keyword(s):  

1994 ◽  
Vol 39 (9) ◽  
pp. 916-916
Author(s):  
Terri Gullickson

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