scholarly journals CHARACTERIZATION OF THE METABOCHIP IN DIVERSE POPULATIONS FROM THE INTERNATIONAL HAPMAP PROJECT IN THE EPIDEMIOLOGIC ARCHITECTURE FOR GENES LINKED TO ENVIRONMENT (EAGLE) PROJECT

2012 ◽  
Author(s):  
DANA C. CRAWFORD ◽  
ROBERT GOODLOE ◽  
KRISTIN BROWN-GENTRY ◽  
SARAH WILSON ◽  
JAMIE ROBERSON ◽  
...  
1990 ◽  
Vol 17 (2) ◽  
pp. 106-108 ◽  
Author(s):  
J. L. Starr ◽  
G. L. Schuster ◽  
C. E. Simpson

Abstract Seedlings of TP-135, an interspecific hybrid derived from four Arachis spp. and resistant to Meloidogyne arenaria race 1, and the susceptible cultivar Tamnut 74 were inoculated with 2,500 freshly hatched juveniles of M. arenaria. Plants were harvested at 7, 14, 21, and 35 days after inoculation (DAI) and the roots treated with acid fuchsin to stain infecting nematodes. Adult females with eggs were detected in roots of Tamnut 74 at 21 DAI, producing 1,395 eggs/g roots at 35 DAI. Most nematodes remained as second-stage juveniles and no nematode was observed to develop beyond the third or fourth juvenile stage in roots of TP-135 by 35 DAI. In other experiments, seedlings of Tamnut 74 and root cuttings of TP-135 were each inoculated separately with 3,000 eggs of 10 geographically diverse populations of M. arenaria race 1. All populations of the nematode had greater (P = 0.01) reproduction on Tamnut 74 than on TP-135. Based on these data, we conclude that although the mechanism of resistance in TP-135 to M. arenaria is most similar to that of the wild species A. cardenasii, it is not identical to that of any of the nematode-resistant parental species. Furthermore, we believe that the resistance will be effective against a range of populations of the nematode.


2006 ◽  
Vol 119 (1-2) ◽  
pp. 220-222 ◽  
Author(s):  
Jim Stankovich ◽  
Charles J. Cox ◽  
Rachel B. Tan ◽  
Douglas S. Montgomery ◽  
Stewart J. Huxtable ◽  
...  

2005 ◽  
Vol 15 (11) ◽  
pp. 1592-1593 ◽  
Author(s):  
G. A. Thorisson

2012 ◽  
Vol 05 (03) ◽  
pp. 1260010
Author(s):  
QINGYUN WANG ◽  
YAYUAN XIAO ◽  
HAILU CHEN ◽  
QIN ZOU

The mismatch distribution is a good descriptive summary statistic that describes the phenomena of population genetics. This article scanned mismatch distribution on human genome with single nucleotide polymorphism (SNP) data from the International HapMap Project. It is found that the abnormal mismatch distribution could imply some special segments on some chromosomes. One of the segments, on chromosome 8, was proved as an inversion. Other special segments may also imply some special structure on chromosomes, such as duplication. The conjectures of other segments still need further research.


2008 ◽  
Vol 2 ◽  
pp. BBI.S455 ◽  
Author(s):  
Wei Zhang ◽  
Mark J. Ratain ◽  
M. Eileen Dolan

The exploration of quantitative variation in complex traits such as gene expression and drug response in human populations has become one of the major priorities for medical genetics. The International HapMap Project provides a key resource of genotypic data on human lymphoblastoid cell lines derived from four major world populations of European, African, Chinese and Japanese ancestry for researchers to associate with various phenotypic data to find genes affecting health, disease and response to drugs. Recent progress in dissecting genetic contribution to natural variation in gene expression within and among human populations and variation in drug response are two examples in which researchers have utilized the HapMap resource. The HapMap Project provides new insights into the human genome and has applicability to pharmacogenomics studies leading to personalized medicine.


2007 ◽  
Vol 10 (3) ◽  
pp. 186-198 ◽  
Author(s):  
Charles Rotimi ◽  
Mark Leppert ◽  
Ichiro Matsuda ◽  
Changqing Zeng ◽  
Houcan Zhang ◽  
...  

2021 ◽  
Author(s):  
Yaowaluck Hongkaew ◽  
Wendy Y Wang ◽  
Roger Gaedigk ◽  
Chonlaphat Sukasem ◽  
Andrea Gaedigk

Aim: Several CYP2D6 Luminex xTAG genotype calls were identified as inconsistent or suspicious among Thai subjects and further characterized to identify the root causes. Material & methods: Forty-eight subjects were followed-up with long-range-PCR, quantitative copy number assays and/or Sanger sequencing. Results: Most of the Luminex-duplication calls were either negative or had hybrid structures involving CYP2D6*36 in various configurations. Ten samples were inaccurately called as CYP2D6*2, *29 or *35 alleles. Sequencing revealed three novel haplotypes, CYP2D6*142, *143 and *144 of which two are nonfunctional. Conclusion: The Luminex platform produced a relatively high number of false genotype calls for Thai subjects. Our findings underscore the need for the systematic characterization of the CYP2D6 locus in diverse populations and rigorous platform validation.


PLoS ONE ◽  
2012 ◽  
Vol 7 (2) ◽  
pp. e30994 ◽  
Author(s):  
Colton Linnertz ◽  
Ann M. Saunders ◽  
Michael W. Lutz ◽  
Donna M. Crenshaw ◽  
Iris Grossman ◽  
...  
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