An Automated Colony Counter for Serial-Dilution Culture Method

Author(s):  
Naphatsawan Vongmanee ◽  
Aonjira Bunmak ◽  
Sarinporn Visitsattapongse
2018 ◽  
Vol 31 (1) ◽  
pp. 491-503
Author(s):  
Hugh L. MacIntyre ◽  
John J. Cullen ◽  
Shannah Rastin ◽  
Magdalena Waclawik ◽  
Kimberly J. Franklin ◽  
...  

2004 ◽  
Vol 70 (7) ◽  
pp. 4363-4366 ◽  
Author(s):  
Liesbeth Schoenborn ◽  
Penelope S. Yates ◽  
Bronwyn E. Grinton ◽  
Philip Hugenholtz ◽  
Peter H. Janssen

ABSTRACT Representatives of only four well-characterized bacterial phyla were isolated from a pasture soil by using liquid serial dilution culture. In contrast, members of Acidobacteria, Verrucomicrobia, and Gemmatimonadetes and of other poorly represented bacterial lineages were isolated in earlier experiments with solidified versions of the same media. We conclude that, contrary to expectation, liquid serial dilution culture is inferior to culturing on solid media for isolating representatives of many bacterial phyla from soil.


eLife ◽  
2020 ◽  
Vol 9 ◽  
Author(s):  
Amir Erez ◽  
Jaime G Lopez ◽  
Benjamin G Weiner ◽  
Yigal Meir ◽  
Ned S Wingreen

Microbial communities feature an immense diversity of species and this diversity is linked to outcomes ranging from ecosystem stability to medical prognoses. Yet the mechanisms underlying microbial diversity are under debate. While simple resource-competition models don't allow for coexistence of a large number of species, it was recently shown that metabolic trade-offs can allow unlimited diversity. Does this diversity persist with more realistic, intermittent nutrient supply? Here, we demonstrate theoretically that in serial dilution culture, metabolic trade-offs allow for high diversity. When a small amount of nutrient is supplied to each batch, the serial dilution dynamics mimic a chemostat-like steady state. If more nutrient is supplied, community diversity shifts due to an 'early-bird' effect. The interplay of this effect with different environmental factors and diversity-supporting mechanisms leads to a variety of relationships between nutrient supply and diversity, suggesting that real ecosystems may not obey a universal nutrient-diversity relationship.


Author(s):  
Dimitria Theophanis Boukouvalas ◽  
Peterson Belan ◽  
Cintia Raquel Lima Leal ◽  
Renato Araújo Prates ◽  
Sidnei Alves de Araújo

Author(s):  
Molly F. Mare

An attempt has been made to deal briefly but quantitatively with all size groups of the fauna and flora in a marine mud deposit.It has been necessary to propose the following new terminology: theMacrobenthos, which is here equivalent to the macrofauna, theMeiobenthos, under which term are included copepods, nematodes, foraminifera, etc., and theMicrobenthos, comprising the rest of the protozoa, bacteria, bottom diatoms and other algae; planktonic diatoms and coloured flagellates also occur on the bottom in the region investigated but are not regarded as true microbenthos.A quantitative ecological study of the microbenthos has been started and the habitat is first described, stress being laid on points of importance to the microorganisms.The census method for bacteria was an agar-plate method and that for the protozoa and diatoms was a dilution culture method modified from that used by soil microbiologists.These methods give minimal values for the total population and may safely be used for comparative purposes. The results are still tentative.Typical figures for the minimal numbers and volumes of living protoplasm per gram of dry mud in the top ½ cm. layer are given in Tables I-IV.The surface layer is much richer in all types of organisms than is the mud deeper in the cores. There is considerable local horizontal variation in numbers of bacteria and protozoa, suggesting dense aggregations.Diatoms contribute by far the greatest bulk to the total volume of living micro-organisms; planktonic diatoms, particularly during the summer, completely outweigh the true microbenthos.


2020 ◽  
Vol 1 (1) ◽  
pp. 8-16
Author(s):  
Selviana Anggraini ◽  
Jumsu Trisno ◽  
Tizelia Tizelia

The use of rhizobacteria is an alternative control in suppressing plant disease attacks. The purpose of this study was to obtain indigenous rhizobacteria which have the potential as antagonist agents of Fusarium oxysporum f. sp. cubense. Sampling was carried out randomly selected on endemic lands. Isolation of rhizobacteria using serial dilution method and its antagonist test against Fusarium oxysporum f. sp. cubense uses the dual culture method. The isolation results from 3 banana cultivars (kepok, raja sere, and mas) obtained 24 rhizobacterial isolates with different morphological and physiological characters. The antagonist test results showed that 8 rhizobacterial isolates were able to suppress the growth of Fusarium oxysporum f. sp. cubense and is not plant pathogenic.


Author(s):  
W. Shain ◽  
H. Ancin ◽  
H.C. Craighead ◽  
M. Isaacson ◽  
L. Kam ◽  
...  

Neural protheses have potential to restore nervous system functions lost by trauma or disease. Nanofabrication extends this approach to implants for stimulating and recording from single or small groups of neurons in the spinal cord and brain; however, tissue compatibility is a major limitation to their practical application. We are using a cell culture method for quantitatively measuring cell attachment to surfaces designed for nanofabricated neural prostheses.Silicon wafer test surfaces composed of 50-μm bars separated by aliphatic regions were fabricated using methods similar to a procedure described by Kleinfeld et al. Test surfaces contained either a single or double positive charge/residue. Cyanine dyes (diIC18(3)) stained the background and cell membranes (Fig 1); however, identification of individual cells at higher densities was difficult (Fig 2). Nuclear staining with acriflavine allowed discrimination of individual cells and permitted automated counting of nuclei using 3-D data sets from the confocal microscope (Fig 3). For cell attachment assays, LRM5 5 astroglial cells and astrocytes in primary cell culture were plated at increasing cell densities on test substrates, incubated for 24 hr, fixed, stained, mounted on coverslips, and imaged with a 10x objective.


2001 ◽  
Vol 120 (5) ◽  
pp. A542-A543
Author(s):  
T HIROSE ◽  
K YASUCHIKA ◽  
T FUJIKAWA ◽  
H FUJII ◽  
S OE ◽  
...  

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