High-Pressure Protein Crystallography and NMR to Explore Protein Conformations

2011 ◽  
Vol 40 (1) ◽  
pp. 81-98 ◽  
Author(s):  
Marcus D. Collins ◽  
Chae Un Kim ◽  
Sol M. Gruner
2016 ◽  
Vol 468 ◽  
pp. 53-62 ◽  
Author(s):  
Katarzyna Kurpiewska ◽  
Kamil Dziubek ◽  
Andrzej Katrusiak ◽  
Josep Font ◽  
Marc Ribò ◽  
...  

FEBS Journal ◽  
2019 ◽  
Vol 286 (6) ◽  
pp. 1204-1213
Author(s):  
Thierry Prangé ◽  
Eric Girard ◽  
Roger Fourme ◽  
Anne‐Claire Dhaussy ◽  
Brian Edwards ◽  
...  

2001 ◽  
Vol 8 (5) ◽  
pp. 1149-1156 ◽  
Author(s):  
R. Fourme ◽  
R. Kahn ◽  
M. Mezouar ◽  
E. Girard ◽  
C. Hoerentrup ◽  
...  

2020 ◽  
Author(s):  
Xingjian Xu ◽  
Donald Gagné ◽  
James M. Aramini ◽  
Kevin H. Gardner

ABSTRACTProteins often interconvert between different conformations in ways critical to their function. While manipulating such equilibria for biophysical study is often challenging, the application of pressure is a potential route to achieve such control by favoring the population of lower volume states. Here, we use this feature to study the interconversion of ARNT PAS-B Y456T, which undergoes a dramatic beta-strand slip as it switches between two stably-folded conformations. Coupling high pressure and biomolecular NMR, we obtained the first quantitative data testing two key hypotheses of this process: the slipped conformation is both smaller and less compressible than the wildtype equivalent, and the interconversion proceeds through a chiefly-unfolded intermediate state. Our work exemplifies how these approaches, which can be generally applied to protein conformational switches, can provide unique information that is not easily accessible through other techniques.


2017 ◽  
Vol 24 (1) ◽  
pp. 338-343 ◽  
Author(s):  
Nobuhisa Watanabe ◽  
Takayuki Nagae ◽  
Yusuke Yamada ◽  
Ayana Tomita ◽  
Naohiro Matsugaki ◽  
...  

The protein crystallography beamline BL2S1, constructed at one of the 5 T superconducting bending-magnet ports of the Aichi synchrotron, is available to users associated with academic and industrial organizations. The beamline is mainly intended for use in X-ray diffraction measurements of single-crystals of macromolecules such as proteins and nucleic acids. Diffraction measurements for crystals of other materials are also possible, such as inorganic and organic compounds. BL2S1 covers the energy range 7–17 keV (1.8–0.7 Å) with an asymmetric-cut curved single-crystal monochromator [Ge(111) or Ge(220)], and a platinum-coated Si mirror is used for vertical focusing and as a higher-order cutoff filter. The beamline is equipped with a single-axis goniometer, a CCD detector, and an open-flow cryogenic sample cooler. High-pressure protein crystallography with a diamond anvil cell can also be performed using this beamline.


Author(s):  
Xingjian Xu ◽  
Donald Gagné ◽  
James M. Aramini ◽  
Kevin H. Gardner

2010 ◽  
Vol 81 (8) ◽  
pp. 084302 ◽  
Author(s):  
Yoshihisa Suzuki ◽  
Masayuki Tsukamoto ◽  
Haruhiko Sakuraba ◽  
Masamitsu Matsumoto ◽  
Makoto Nagasawa ◽  
...  

Author(s):  
Marek Malecki ◽  
James Pawley ◽  
Hans Ris

The ultrastructure of cells suspended in physiological fluids or cell culture media can only be studied if the living processes are stopped while the cells remain in suspension. Attachment of living cells to carrier surfaces to facilitate further processing for electron microscopy produces a rapid reorganization of cell structure eradicating most traces of the structures present when the cells were in suspension. The structure of cells in suspension can be immobilized by either chemical fixation or, much faster, by rapid freezing (cryo-immobilization). The fixation speed is particularly important in studies of cell surface reorganization over time. High pressure freezing provides conditions where specimens up to 500μm thick can be frozen in milliseconds without ice crystal damage. This volume is sufficient for cells to remain in suspension until frozen. However, special procedures are needed to assure that the unattached cells are not lost during subsequent processing for LVSEM or HVEM using freeze-substitution or freeze drying. We recently developed such a procedure.


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