Molecular phylogenetic analysis of the catfish species Auchenoglanis occidentalis (Valenciennes, 1840) (Pisces: Claroteidae) from Lake Turkana in East Africa: taxonomic implications

Zootaxa ◽  
2018 ◽  
Vol 4450 (1) ◽  
pp. 115
Author(s):  
BRIAN OKWIRI ◽  
LIANG CAO ◽  
DOROTHY WANJA NYINGI ◽  
E. ZHANG
Keyword(s):  
Phylogenetic Analysis ◽  
Distinct Species ◽  
Coi Gene ◽  
Valid Species ◽  
Morphological Evidence ◽  
African Catfish ◽  
Lake Turkana ◽  
The Family ◽  
Molecular Phylogenetic ◽  
Taxonomic Implications

Cytochrome c oxidase subunit I (COI) gene sequences of two specimens here recognized as Auchenoglanis occidentalis from Lake Turkana in the Ethiopian section were determined. A COI gene-based phylogenetic analysis was performed for these along with sequences of African catfish species from the family Clarotidae available in GenBank. Based on results of this analysis, it is concluded that (1) the currently identified A. occidentalis is a species complex that includes several distinct species; (2) the Niger River basin harbors two distinct species of Auchenoglanis, one of which occurs in Lake Turkana, as well as A. biscutatus; and (3) A. sacchii is likely a valid species, but it is not the endemic species of Lake Turkana. It is suggested here that species diversity of Auchenoglanis requires further study based on molecular and morphological evidence. 

scholarly journals Integrative taxonomy reveals a rare and new cusk-eel species of Luciobrotula (Teleostei, Ophidiidae) from the Solomon Sea, West Pacific

2021 ◽  
Vol 750 ◽  
pp. 52-69
Author(s):  
Man-Kwan Wong ◽  
Mao-Ying Lee ◽  
Wei-Jen Chen
Keyword(s):  
Lateral Line ◽  
Gene Tree ◽  
Distinct Species ◽  
Integrative Taxonomy ◽  
Coi Gene ◽  
Valid Species ◽  
The West ◽  
West Pacific ◽  
Fin Ray ◽  
The Family

With six valid species, Luciobrotula is a small genus of the family Ophidiidae, commonly known as cusk-eels. They are benthopelagic fishes occurring at depths ranging from 115–2300 m in the Atlantic, Indian, and Pacific Oceans. Among them, Luciobrotula bartschi is the only known species in the West Pacific. Three specimens of Luciobrotula were collected from the Philippine Sea, Bismarck Sea, and Solomon Sea in the West Pacific during the AURORA, PAPUA NIUGINI, and MADEEP expeditions under the Tropical Deep-Sea Benthos program, and all of them were initially identified as L. bartschi. Subsequent examination with integrative taxonomy indicates that they belong to two distinct species, with the specimen collected from the Solomon Sea representing a new species, which is described here. In terms of morphology, Luciobrotula polylepis sp. nov. differs from its congeners by having a relatively longer lateral line (end of the lateral line below the 33rd dorsal-fin ray) and fewer vertebrae (abdominal vertebrae 13, total vertebrae 50). In the inferred COI gene tree, the two western Pacific species of Luciobrotula do not form a monophyletic group. The genetic K2P distance between the two species is 13.8% on average at the COI locus.

A REVISED GENERIC SYNOPSIS OF HYACINTHACEAE IN SUB-SAHARAN AFRICA, BASED ON MOLECULAR EVIDENCE, INCLUDING NEW COMBINATIONS AND THE NEW TRIBE PSEUDOPROSPEREAE

2003 ◽  
Vol 60 (3) ◽  
pp. 533-568 ◽  
Author(s):  
J. C. MANNING ◽  
P. GOLDBLATT ◽  
M. F. FAY
Keyword(s):  
Phylogenetic Analysis ◽  
Sub Saharan Africa ◽  
Molecular Evidence ◽  
New Combinations ◽  
Generic Level ◽  
The Family ◽  
Molecular Phylogenetic ◽  
Single Genus ◽  
New Tribe ◽  
Sub Saharan

A revised generic synopsis of sub-Saharan Hyacinthaceae is presented, based on a molecular phylogenetic analysis of the family. Generic rank is accorded only to reciprocally monophyletic clades that can be distinguished by recognizable morphological discontinuities, thereby permitting an appropriate generic assignment of species not included in the analysis. Three subfamilies are recognized within the region. Subfamily Ornithogaloideae, characterized by flattened or angular seeds with tightly adhering testa, is considered to include the single genus Ornithogalum, which is expanded to include the genera Albuca, Dipcadi, Galtonia, Neopatersonia and Pseudogaltonia. Recognizing any of these segregates at generic level renders the genus Ornithogalum polyphyletic, while subdivision of Ornithogalum into smaller, morphologically distinguishable segregates in order to preserve the monophyly of each is not possible. Subfamily Urgineoideae, characterized by flattened or winged seeds with brittle, loosely adhering testa, comprises the two mainland African genera Bowiea and Drimia. The latter is well circumscribed by its deciduous, short-lived perianth and includes the previously recognized genera Litanthus, Rhadamanthus, Schizobasis and Tenicroa. The monotypic Madagascan Igidia is provisionally included in the subfamily as a third genus on the basis of its seeds, pending molecular confirmation of its relationships. Subfamily Hyacinthoideae resolves into three clades, distinguished as tribes Hyacintheae (strictly northern hemisphere and not treated further), Massonieae and Pseudoprospereae tribus nov. Full descriptions and a key to their identification are provided for all genera. New combinations reflecting the generic circumscriptions adopted here are made for most African and all Indian and Madagascan species.

DNA barcodes provide evidence for the independent origin of the cultivated silkworms Samia ricini and Samia cynthia

2021 ◽  
pp. 1-8
Author(s):  
J.-C. Huang ◽  
X.-Y. Li ◽  
Y.-P. Li ◽  
R.-S. Zhang ◽  
D.-B. Chen ◽  
...  
Keyword(s):  
Genetic Distance ◽  
Phylogenetic Relationship ◽  
Dna Barcode ◽  
Distinct Species ◽  
Coi Gene ◽  
Molecular Evidence ◽  
Dna Barcodes ◽  
Close Relationship ◽  
Molecular Phylogenetic ◽  
Phylogenetic Framework

Samia ricini (Wm. Jones) and Samia cynthia (Drury) (Lepidoptera: Saturniidae) have been used as traditional sources of food as well as silk-producing insects. However, the phylogenetic relationship between the two silkworms remains to be addressed. In this study, the mitochondrial cytochrome c oxidase subunit 1 (COI) gene sequences corresponding to DNA barcodes from 13 Samia species were analysed, and a DNA barcode-based phylogenetic framework for these Samia species was provided. Phylogenetic analysis showed that multiple individuals of a species could be clustered together. Our analysis revealed a close relationship among Samia yayukae Paukstadt, Peigler and Paukstadt, Samia abrerai Naumann and Peigler, Samia kohlli Naumann and Peigler, Samia naessigi Naumann and Peigler, Samia naumanni Paukstadt, Peigler and Paukstadt, and Samia kalimantanensis Paukstadt and Paukstadt. The mixed clustering relationship and low Kimura-2-parameter (K2P) genetic distance (0.006) between individuals of S. ricini and Samia canningi (Hutton) indicated that the cultivated silkworm S. ricini was derived from the non-cultivated silkworm S. canningi. The remote phylogenetic relationship and high K2P genetic distance (0.039) indicated that S. ricini and S. cynthia are distinct species, thus providing solid molecular evidence that they had entirely independent origins. The relationships between S. kalimantanensis and S. naumanni and between S. cynthia and Samia wangi Naumann and Peigler, as well as the potential cryptic species within S. abrerai were also discussed. This is the first study to assess the DNA barcodes of the genus Samia, which supplements the knowledge of species identification and provides the first molecular phylogenetic framework for Samia species.

Revisiting the type of Cespitularia stolonifera Gohar, 1938 leads to the description of a new genus and a species of the family Xeniidae (Octocorallia, Alcyonacea)

Zootaxa ◽  
2021 ◽  
Vol 4964 (2) ◽  
pp. 330-344
Author(s):  
YEHUDA BENAYAHU ◽  
LEEN P. VAN OFWEGEN ◽  
J. P. RUIZ ALLAIS ◽  
CATHERINE S. MCFADDEN
Keyword(s):  
Phylogenetic Analysis ◽  
New Genus ◽  
Soft Coral ◽  
Taxonomic Assignment ◽  
Coral Genus ◽  
The Family ◽  
Molecular Phylogenetic ◽  
Membranous Part ◽  
Green Island ◽  
A New Species

Because of the problematical identity and status of the type of the xeniid soft coral genus Cespitularia Milne-Edwards & Haime, 1850, the species C. stolonifera Gohar, 1938 is revised. Examination of the type colonies has led to the establishment of the new genus Unomia gen. n. which is described and depicted. This genus features a stalk, commonly divided into branches featuring a diffuse polypiferous part consisting of distal clustered polyps and proximal individual ones on the stalk or the basal membranous part of the colonies. The sclerites are ellipsoid platelets composed of dendritic calcite rods whose tips are distinct on the surface of the platelets. Freshly collected material from Venezuelan reefs where the species is invasive was subjected to molecular phylogenetic analysis, the results of which substantiate the taxonomic assignment of the new genus under U. stolonifera comb. n. A new species, U. complanatis, from Japan and Green Island (Taiwan) is described and further illustrates the extent of the interspecific morphological variation within the genus. The results reveal that the biogeographic distribution of Unomia gen. n. includes Pacific Ocean reefs in addition to the previously reported invaded Caribbean reefs. 

scholarly journals A new species of Pilarella (Copepoda, Calanoida, Arietellidae) from the hyperbenthic layer of Japan, with a molecular phylogenetic analysis of some representative genera of the Arietellidae

ZooKeys ◽  
2021 ◽  
Vol 1038 ◽  
pp. 179-194
Author(s):  
Sota Komeda ◽  
Kenta Adachi ◽  
Susumu Ohtsuka
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Molecular Phylogenetic Analysis ◽  
Posterior Border ◽  
The Third ◽  
The Family ◽  
Molecular Phylogenetic ◽  
New Diagnosis ◽  
Caudal Rami ◽  
A New Species

A new species of the continental shelf hyperbenthic genus Pilarella is described, the first from the Indo-Pacific. This is the second species of Pilarella known, and the first description of a male in the genus. The new species is easily distinguished from other species of Pilarella (P. longicornis) based on: (1) short caudal rami, approximately 1.5 times longer than wide; (2) 2 setae on the mandibular endopod; (3) 6 setae on the maxillular coxal epipodite; and (4) in the female, a short left antennule reaching the posterior border of the genital double-somite. The new diagnosis of Pilarella differs from Metacalanus in the separation of ancestral segments IX–XII and XIV–XV of the antennule, and the presence of 5–6 setae on the maxillular praecoxal arthrite. Pilarella is also separated from Metacalanalis based on the absence of a seta on the third ancestral segment of the antennary exopod, the symmetry of legs 1–3, the presence of a medial basal seta on the female leg 5, and 2 lateral exopodal spines on the female leg 5. A molecular phylogenetic analysis of some representative genera of the family Arietellidae, including the present new species, recovers two arietellid clades (Metacalanus- and Arietellus-clades) as in previous studies. Dichotomous keys for the genera of Arietellidae and the species of Pilarella are included.

scholarly journals The first representatives of the millipede family Glomeridellidae (Diplopoda, Glomerida) recorded from China and Indochina

ZooKeys ◽  
2020 ◽  
Vol 954 ◽  
pp. 1-15
Author(s):  
Weixin Liu ◽  
Sergei Golovatch
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Dna Barcoding ◽  
Southern China ◽  
Mitochondrial Gene ◽  
Guizhou Province ◽  
The Family ◽  
Structural Details ◽  
Molecular Phylogenetic ◽  
A New Species

A new species of glomeridellid millipede is described from Guizhou Province, southern China: Tonkinomeris huzhengkunisp. nov. This new epigean species differs very clearly in many structural details, being sufficiently distinct morphologically and disjunct geographically from T. napoensis Nguyen, Sierwald & Marek, 2019, the type and sole species of Tonkinomeris Nguyen, Sierwald & Marek, 2019, which was described recently from northern Vietnam. The genus Tonkinomeris is formally relegated from Glomeridae and assigned to the family Glomeridellidae, which has hitherto been considered strictly Euro-Mediterranean in distribution and is thus new to the diplopod faunas of China and Indochina. Tonkinomeris is re-diagnosed and shown to have perhaps the basalmost position in the family Glomeridellidae. Its relationships are discussed, both morphological and zoogeographical, within and outside the Glomeridellidae, which can now be considered as relict and basically Oriental in origin. Because of the still highly limited array of DNA-barcoding sequences of the COI mitochondrial gene available in the GenBank, the first molecular phylogenetic analysis of Glomerida attempted here shows our phylogram to be too deficient to consider meaningful.

Biology, Management, and Protection of North American Sturgeon

2002 ◽  
Keyword(s):  
Distinct Species ◽  
Current Status ◽  
Valid Species ◽  
Morphological Evidence ◽  
Morphometric Character ◽  
Meristic Characters ◽  
Shovelnose Sturgeon ◽  
Major Threat ◽  
Pallid Sturgeon ◽  
Two Indices

<em>Abstract.</em>—It is difficult to distinguish pallid sturgeon <em>Scaphirhynchus albus</em> from the morphologically similar, congeneric and sympatric shovelnose sturgeon <em>S. platorynchus</em>. This has led some to question whether the pallid sturgeon is indeed a valid species. Another controversy is whether the two species are hybridizing. Indices, based on various morphometric and meristic characters, have been proposed to discriminate among <em>Scaphirhynchus</em> taxa, but they are cumbersome to calculate in the field. We report two mathematical indices developed via multiple regression analysis that use five morphometric ratios and two meristics (Character Index), or the five morphometric ratios alone (Morphometric Character Index) as taxon predictors. Data from a study of pallid sturgeon and shovelnose sturgeon conducted by Carlson and Pflieger (1981) were used to develop the regression models. The consistency of identifications made by the two indices was examined using Discriminant Functions Analysis (DFA) on a collection of 257 <em>Scaphirhynchus</em> specimens from throughout the pallid sturgeon range. Specimens identified via the CI and mCI as pallid sturgeon grouped distinctly from the shovelnose sturgeon cluster; specimens identified as hybrids by the two indices formed an intermediate cluster. The majority (90% and 89.7%, respectively) of the specimens identified as pallid sturgeon by the Character Index (CI) and the Morphometric Character Index (mCI) were classified as pallid sturgeon by DFA. This morphological evidence supports the current status of pallid sturgeon and shovelnose sturgeon as distinct species. Interspecific hybridization, considered by some to be a major threat to the pallid sturgeon, appears to be common. The Pallid Sturgeon Recovery Team has recommended the CI for field identifications throughout the pallid sturgeon’s range.

Mitochondrial DNA sequence evidence supporting the recognition of a new North Atlantic Pseudostichopus species (Echinodermata: Holothuroidea)

2004 ◽  
Vol 84 (5) ◽  
pp. 1077-1084 ◽  
Author(s):  
Francisco A. Solís-Marín ◽  
David S.M. Billett ◽  
Joanne Preston ◽  
Alex D. Rogers
Keyword(s):  
Dna Sequences ◽  
Mitochondrial Gene ◽  
Distinct Species ◽  
Molecular Study ◽  
Morphological Characters ◽  
Coi Gene ◽  
Species Status ◽  
Separate Species ◽  
The Family ◽  
A New Species

A new species of the synallactid sea cucumber genus Pseudostichopus is described, P. aemulatus sp. nov., based on genetic (DNA sequences of the mitochondrial gene Cytochrome Oxidase I [COI] gene) and morphological characters. A comparative molecular study with two other species of the same genus (P. villosus and P. mollis) and from a different family (Isostichopus fuscus) was carried out in order to clarify its taxonomic identity. The nucleotide distance between P. aemulatus sp. nov. and P. villosus and P. mollis is sufficient to support distinct species status. The estimated difference in the number of amino acids, coded for by a partially sequenced COI gene, within the species of the family Synallactidae ranged from 4 to 18. The phylogenetic analysis clearly supports separate species status of these sympatric morphotypes, as indicated by the morphological analysis.

Adenophora xiaoxiensis (Campanulaceae), an Endangered Species from China

Phytotaxa ◽  
2019 ◽  
Vol 402 (2) ◽  
pp. 88
Author(s):  
XIN-YU YI ◽  
DAN XIE ◽  
CHENG ZHANG ◽  
YU-QIN WANG ◽  
YONG-QUAN KANG ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Distinct Species ◽  
Red List ◽  
Central China ◽  
International Union ◽  
Restricted Area ◽  
Molecular Phylogenetic ◽  
Red List Categories ◽  
A New Species

Adenophora xiaoxiensis (Campanulaceae), a new species from central China is described and illustrated. Molecular phylogenetic analysis (based on nuclear ribosomal ITS and the plastid regions trnL-F and matK) and morphology support recognition of A. xiaoxiensis as a distinct species sister to A. wilsonii. Adenophora xiaoxiensis has ovate-elliptic to broadly lanceolate cauline leaves with irregularly biserrate margins, triangular-ovate calyx lobes with 1-3 pairs subulate or linear teeth and a white corolla. About 70 individuals were observed in a restricted area of less than 100 m2. The habitat could be easily disturbed or destroyed, thus, we assessed it as endangered (EN), based on Criteria D of the International Union for Conservation of Nature Red List Categories.

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