scholarly journals Antibiotic-free segregational plasmid stabilization in Escherichia coli owing to the knockout of triosephosphate isomerase (tpiA)

2014 ◽  
Vol 13 (1) ◽  
pp. 58 ◽  
Author(s):  
Ram Velur Selvamani ◽  
Maurice Telaar ◽  
Karl Friehs ◽  
Erwin Flaschel
Author(s):  
Mirja Krause ◽  
Tiila-Riikka Kiema ◽  
Peter Neubauer ◽  
Rik K. Wierenga

The crystal structures are described of two variants of A-TIM: Ma18 (2.7 Å resolution) and Ma21 (1.55 Å resolution). A-TIM is a monomeric loop-deletion variant of triosephosphate isomerase (TIM) which has lost the TIM catalytic properties. Ma18 and Ma21 were identified after extensive directed-evolution selection experiments using anEscherichia coliL-arabinose isomerase knockout strain expressing a randomly mutated A-TIM gene. These variants facilitate better growth of theEscherichia coliselection strain in medium supplemented with 40 mML-arabinose. Ma18 and Ma21 differ from A-TIM by four and one point mutations, respectively. Ma18 and Ma21 are more stable proteins than A-TIM, as judged from CD melting experiments. Like A-TIM, both proteins are monomeric in solution. In the Ma18 crystal structure loop 6 is open and in the Ma21 crystal structure loop 6 is closed, being stabilized by a bound glycolate molecule. The crystal structures show only small differences in the active site compared with A-TIM. In the case of Ma21 it is observed that the point mutation (Q65L) contributes to small structural rearrangements near Asn11 of loop 1, which correlate with different ligand-binding properties such as a loss of citrate binding in the active site. The Ma21 structure also shows that its Leu65 side chain is involved in van der Waals interactions with neighbouring hydrophobic side-chain moieties, correlating with its increased stability. The experimental data suggest that the increased stability and solubility properties of Ma21 and Ma18 compared with A-TIM cause better growth of the selection strain when coexpressing Ma21 and Ma18 instead of A-TIM.


1999 ◽  
Vol 16 (3) ◽  
pp. 432-439 ◽  
Author(s):  
Gong-Li Tang ◽  
Yan-Fang Wang ◽  
Jian-Shao Bao ◽  
Hai-Bao Chen

PLoS ONE ◽  
2011 ◽  
Vol 6 (6) ◽  
pp. e21035 ◽  
Author(s):  
Beatriz Aguirre ◽  
Miguel Costas ◽  
Nallely Cabrera ◽  
Guillermo Mendoza-Hernández ◽  
Donald L. Helseth ◽  
...  

2006 ◽  
Vol 189 (2) ◽  
pp. 491-500 ◽  
Author(s):  
Priya Prakash Budde ◽  
Brigid M. Davis ◽  
Jie Yuan ◽  
Matthew K. Waldor

ABSTRACT Toxin-antitoxin (TA) loci, which were initially characterized as plasmid stabilization agents, have in recent years been detected on the chromosomes of numerous free-living bacteria. Vibrio cholerae, the causative agent of cholera, contains 13 putative TA loci, all of which are clustered within the superintegron on chromosome II. Here we report the characterization of the V. cholerae higBA locus, also known as VCA0391/2. Deletion of higA alone was not possible, consistent with predictions that it encodes an antitoxin, and biochemical analyses confirmed that HigA interacts with HigB. Transient exogenous expression of the toxin HigB dramatically slowed growth of V. cholerae and Escherichia coli and reduced the numbers of CFU by several orders of magnitude. HigB toxicity could be counteracted by simultaneous or delayed production of HigA, although HigA's effect diminished as the delay lengthened. Transcripts from endogenous higBA increased following treatment of V. cholerae with translational inhibitors, presumably due to reduced levels of HigA, which represses the higBA locus. However, no higBA-dependent cell death was observed in response to such stimuli. Thus, at least under the conditions tested, activation of endogenous HigB does not appear to be bactericidal.


1993 ◽  
Vol 211 (3) ◽  
pp. 703-710 ◽  
Author(s):  
Torben V. BORCHERT ◽  
Kathryn PRATT ◽  
Johan Ph. ZEELEN ◽  
Mia CALLENS ◽  
Martin E. M. NOBLE ◽  
...  

2008 ◽  
Vol 190 (24) ◽  
pp. 8137-8144 ◽  
Author(s):  
Rong Shi ◽  
Marco Pineda ◽  
Eunice Ajamian ◽  
Qizhi Cui ◽  
Allan Matte ◽  
...  

ABSTRACT Three catabolic enzymes, UlaD, UlaE, and UlaF, are involved in a pathway leading to fermentation of l-ascorbate under anaerobic conditions. UlaD catalyzes a β-keto acid decarboxylation reaction to produce l-xylulose-5-phosphate, which undergoes successive epimerization reactions with UlaE (l-xylulose-5-phosphate 3-epimerase) and UlaF (l-ribulose-5-phosphate 4-epimerase), yielding d-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway. We describe here crystallographic studies of UlaE from Escherichia coli O157:H7 that complete the structural characterization of this pathway. UlaE has a triosephosphate isomerase (TIM) barrel fold and forms dimers. The active site is located at the C-terminal ends of the parallel β-strands. The enzyme binds Zn2+, which is coordinated by Glu155, Asp185, His211, and Glu251. We identified a phosphate-binding site formed by residues from the β1/α1 loop and α3′ helix in the N-terminal region. This site differs from the well-characterized phosphate-binding motif found in several TIM barrel superfamilies that is located at strands β7 and β8. The intrinsic flexibility of the active site region is reflected by two different conformations of loops forming part of the substrate-binding site. Based on computational docking of the l-xylulose 5-phosphate substrate to UlaE and structural similarities of the active site of this enzyme to the active sites of other epimerases, a metal-dependent epimerization mechanism for UlaE is proposed, and Glu155 and Glu251 are implicated as catalytic residues. Mutation and activity measurements for structurally equivalent residues in related epimerases supported this mechanistic proposal.


1990 ◽  
Vol 54 (8) ◽  
pp. 2189-2191 ◽  
Author(s):  
Fumihiko SATO ◽  
John H. FITCHEN ◽  
Norimatsu TAKESHITA ◽  
Takashi HASHIMOTO ◽  
Naosuke OKADA ◽  
...  

1982 ◽  
Vol 152 (1) ◽  
pp. 98-103
Author(s):  
M Shimosaka ◽  
Y Fukuda ◽  
K Murata ◽  
A Kimura

The closely linked structural genes of phosphofructokinase (pfkA) and triosephosphate isomerase (tpi) of Escherichia coli were separately cloned onto plasmid pBR322. By gene dosage effects, transformed cells of E. coli C600 with these pBR322 hybrid plasmids showed 7- and 16-fold increases in the specific activities of phosphofructokinase and triosephosphate isomerase, respectively, over the specific activities in C600. Dried preparations of E. coli cells dosed with these genes showed appreciably high ATP-regenerating activity.


2019 ◽  
Vol 116 (12) ◽  
pp. 3292-3300 ◽  
Author(s):  
Sachie Senoo ◽  
Sebastian Tommi Tandar ◽  
Sayaka Kitamura ◽  
Yoshihiro Toya ◽  
Hiroshi Shimizu

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