Rice: A Model Plant to Decipher the Hidden Origin of Adventitious Roots

Plant Roots ◽  
2013 ◽  
pp. 164-173
Inventions ◽  
2021 ◽  
Vol 6 (3) ◽  
pp. 52
Author(s):  
Rajan Kapoor ◽  
Aniruddha Datta ◽  
Michael Thomson

Conventional breeding approaches that focus on yield under highly favorable nutrient conditions have resulted in reduced genetic and trait diversity in crops. Under the growing threat from climate change, the mining of novel genes in more resilient varieties can help dramatically improve trait improvement efforts. In this work, we propose the use of the joint graphical lasso for discovering genes responsible for desired phenotypic traits. We prove its efficiency by using gene expression data for wild type and delayed flowering mutants for the model plant. Arabidopsis thaliana shows that it recovers the mutation causing genes LNK1 and LNK2. Some novel interactions of these genes were also predicted. Observing the network level changes between two phenotypes can also help develop meaningful biological hypotheses regarding the novel functions of these genes. Now that this data analysis strategy has been validated in a model plant, it can be extended to crop plants to help identify the key genes for beneficial traits for crop improvement.


Author(s):  
Qiugang Lu ◽  
Michael G. Forbes ◽  
Philip D. Loewen ◽  
Johan U. Backström ◽  
Guy A. Dumont ◽  
...  

Molecules ◽  
2019 ◽  
Vol 24 (3) ◽  
pp. 533 ◽  
Author(s):  
Jiao-jiao Ji ◽  
Qi Feng ◽  
Hai-feng Sun ◽  
Xue-jun Zhang ◽  
Xiao-xiao Li ◽  
...  

Bioactive metabolites in Codonopsis pilosula are of particular interest as an immunostimulant. Methyl jasmonate (MeJA) plays an important role in the elicitation of metabolite biosynthesis. Here, we explored the response of metabolites to MeJA elicitation in C. pilosula adventitious roots and multiple shoots. The results showed that the biomass, polysaccharide, and lobetyolin content of adventitious roots exhibited the highest increases with 100 µmol·L−1 MeJA at the 16th day of subculture, whereas the atractylenolide III (a terpenoid) content increased extremely with 50 µmol·L−1 MeJA treatment at the 7th day of subculture. In addition, the biomass and lobetyolin content significantly increased at the 4th day after treatment. Similarly, the polysaccharide and lobetyolin content increased in multiple shoots. Further identification of different metabolites responding to MeJA by 1H-NMR showed an extremely significant increase of the lobetyolinin level, which coincided with lobetyolin. Accordingly, the precursor, fatty acids, showed a highly significant decrease in their levels. Furthermore, a significant increase in β-d-fructose-butanol glycoside was detected, which was accompanied by a decrease in the sucrose level. Accordingly, the enzyme genes responsible for terpenoid and carbohydrate biosynthesis, CpUGPase, and CpPMK, were up regulated. In conclusion, MeJA promoted culture growth and accelerated bioactive metabolite accumulation by regulating the expression of the metabolite biosynthesis related genes, CpUGPase and CpPMK in C. pilosula.


2021 ◽  
Vol 34 (1) ◽  
pp. 37-46
Author(s):  
Claudia Rossig ◽  
Liam Le Lievre ◽  
Sarah M. Pilkington ◽  
Lynette Brownfield

2021 ◽  
Vol 286 ◽  
pp. 110230
Author(s):  
Muhammad Mobeen Tahir ◽  
Shaohuan Li ◽  
Jiangping Mao ◽  
Yu Liu ◽  
Ke Li ◽  
...  

Plant Direct ◽  
2021 ◽  
Vol 5 (1) ◽  
Author(s):  
Anna Sergeeva ◽  
Tabea Mettler‐Altmann ◽  
Hongjiu Liu ◽  
Hans‐Jörg Mai ◽  
Petra Bauer
Keyword(s):  

2020 ◽  
Vol 33 (2) ◽  
pp. 207
Author(s):  
Rafaela de Oliveira Ferreira ◽  
Ana Cristina Campos Borges ◽  
Juan Augusto Rodrigues dos Campos ◽  
Artur Manoel Leite Medeiros ◽  
Cassia Mônica Sakuragui ◽  
...  

The genus Philodendron Schott comprises the following three currently accepted subgenenera: P. subg. Philodendron, P. subg. Pteromischum and P. subg. Meconostigma; however, these lack a well-defined classification. In the present study, we examined anatomically samples of adventitious roots in species of the group, so as to establish aspects relevant for taxonomic purposes. The anatomical analyses emphasised the characteristics of the steles in cross-sections of the root samples from regions near the apex to the most mature zones. A species of a closely related genus Adelonema, namely A. crinipes, was included in the study to clarify the results. Our results indicated notable differences in the species of the subgenus Meconostigma, mainly in terms of the presence (and variations) of a lobed stele, whereas the cylindrical stele stood out among the common characteristics in P. subg. Philodendron, P. subg. Pteromischum and the related species A. crinipes. Moreover, the characteristics shared by P. subg. Philodendron and P. subg. Pteromischum corroborated the phylogenetic hypothesis that these two taxa were more closely related to one another than to P. subg. Meconostigma.


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