scholarly journals Amino Acid Substitution at Position 95 in Rabies Virus Matrix Protein Affects Viral Pathogenicity

2011 ◽  
Vol 73 (10) ◽  
pp. 1363-1366 ◽  
Author(s):  
Naoto ITO ◽  
Tetsuo MITA ◽  
Kenta SHIMIZU ◽  
Yuki ITO ◽  
Tatsunori MASATANI ◽  
...  
1986 ◽  
Vol 5 (2-3) ◽  
pp. 177-190 ◽  
Author(s):  
Christiane Rayssiguier ◽  
Livia Cioe ◽  
Elizabeth Withers ◽  
William H. Wunner ◽  
Peter J. Curtis

2009 ◽  
Vol 137 (8) ◽  
pp. 1155-1162 ◽  
Author(s):  
W. MARKOTTER ◽  
I. V. KUZMIN ◽  
C. E. RUPPRECHT ◽  
L. H. NEL

SUMMARYLagos bat virus (LBV) constitutes genotype (gt) 2 in theLyssavirusgenus. In contrast to the gt1 lyssavirus, rabies virus (RABV), LBV was reported to have markedly reduced levels of peripheral pathogenicity. However, this opinion was based on a study of one isolate of LBV only and the reduction in pathogenicity was essentially attributed to the amino-acid substitution at position 333 of glycoprotein ectodomain. In the present study we have demonstrated that peripheral pathogenicity of representatives of LBV in a murine model is as high as that of RABV. Comparison of amino-acid substitutions among the viral glycoproteins, demonstrated significant differences within two antigenic sites between different phylogenetic lineages of LBV. Such molecular variability potentially contributes to differences in peripheral pathogenicity of lyssaviruses.


2021 ◽  
Vol 102 (4) ◽  
Author(s):  
Isshu Kojima ◽  
Fumiki Izumi ◽  
Makoto Ozawa ◽  
Yoshikazu Fujimoto ◽  
Misuzu Okajima ◽  
...  

We previously reported that the avirulent fixed rabies virus strain Ni-CE induces a clear cytopathic effect in mouse neuroblastoma cells, whereas its virulent progenitor, the Nishigahara strain, does not. Infection with Nishigahara and Ni-CE mutants containing a single amino acid substitution in the matrix protein (M) demonstrated that the amino acid at position 95 of M (M95) is a cytopathic determinant. The characteristics of cell death induced by Ni-CE infection resemble those of apoptosis (rounded and shrunken cells, DNA fragmentation), but the intracellular signalling pathway for this process has not been fully investigated. In this study, we aimed to elucidate the mechanism by which M95 affects cell death induced by human neuroblastoma cell infection with the Nishigahara, Ni-CE and M95-mutated strains. We demonstrated that the Ni-CE strain induced DNA fragmentation, cell membrane disruption, exposure of phosphatidylserine (PS), activation of caspase-3/7 and anti-poly (ADP-ribose) polymerase 1 (PARP-1) cleavage, an early apoptosis indicator, whereas the Nishigahara strain did not induce DNA fragmentation, caspase-3/7 activation, cell membrane disruption, or PARP-1 cleavage, but did induce PS exposure. We also demonstrated that these characteristics were associated with M95 using M95-mutated strains. However, we found that Ni-CE induced cell death despite the presence of a caspase inhibitor, Z-VAD-FMK. In conclusion, our data suggest that M95 mutation-related cell death is caused by both the caspase-dependent and -independent pathways.


2006 ◽  
Vol 119 (2) ◽  
pp. 208-215 ◽  
Author(s):  
Mutsuyo Takayama-Ito ◽  
Ken-ichi Inoue ◽  
Yoko Shoji ◽  
Satoshi Inoue ◽  
Toshio Iijima ◽  
...  

2017 ◽  
Vol 7 (1) ◽  
Author(s):  
Cinzia Giagulli ◽  
Pasqualina D’Ursi ◽  
Wangxiao He ◽  
Simone Zorzan ◽  
Francesca Caccuri ◽  
...  

2008 ◽  
Vol 137 (1) ◽  
pp. 33-39 ◽  
Author(s):  
Tetsuo Mita ◽  
Kenta Shimizu ◽  
Naoto Ito ◽  
Kentaro Yamada ◽  
Yuki Ito ◽  
...  

Author(s):  
Renganayaki G. ◽  
Achuthsankar S. Nair

Sequence alignment algorithms and  database search methods use BLOSUM and PAM substitution matrices constructed from general proteins. These de facto matrices are not optimal to align sequences accurately, for the proteins with markedly different compositional bias in the amino acid.   In this work, a new amino acid substitution matrix is calculated for the disorder and low complexity rich region of Hub proteins, based on residue characteristics. Insights into the amino acid background frequencies and the substitution scores obtained from the Hubsm unveils the  residue substitution patterns which differs from commonly used scoring matrices .When comparing the Hub protein sequences for detecting homologs,  the use of this Hubsm matrix yields better results than PAM and BLOSUM matrices. Usage of Hubsm matrix can be optimal in database search and for the construction of more accurate sequence alignments of Hub proteins.


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