scholarly journals Increasing accuracy: The advantage of using open access species occurrence database in the Red List assessment

2020 ◽  
Vol 21 (8) ◽  
Author(s):  
Iyan Robiansyah ◽  
Wita Wardani

Abstract. Robiansyah I, Wardani W. 2020. Increasing accuracy: The advantage of using open access species occurrence database in the Red List assessment. Biodiversitas 21: 3658-3664. IUCN Red List is the most widely used instrument to assess and advise the extinction risk of a species. One of the criteria used in IUCN Red List is geographical range of the species assessed (criterion B) in the form of extent of occurrence (EOO) and/or area of occupancy (AOO). While this criterion is presumed to be the easiest to be completed as it is based mainly on species occurrence data, there are some assessments that failed to maximize freely available databases. Here, we reassessed the conservation status of Cibotium arachnoideum, a tree fern distributed in Sumatra and Borneo. This species was previously assessed by Praptosuwiryo (2020, Biodiversitas 21 (4): 1379-1384) which classified the species as Endangered (EN) under criteria B2ab(i,ii,iii); C2a(ii). Using additional data from herbarium specimens recorded in the Global Biodiversity Information Facility (GBIF) website and from peer-reviewed scientific papers, in the present paper we show that C. arachnoideum has a larger extent of occurrence (EOO) and area of occupancy (AOO), more locations and different conservation status compared to those in Praptosuwiryo (2020). Our results are supported by the predicted suitable habitat map of C. arachnoideum produced by MaxEnt modelling method. Based on our assessment, we propose the category of Vulnerable (VU) C2a(i) as the global conservation status for C. arachnoideum. Our study implies the advantage of using open access databases to increase the accuracy of extinction risk assessment under the IUCN Red List criteria in regions like Indonesia, where adequate taxonomical information is not always readily available.

2019 ◽  
Vol 30 (3) ◽  
pp. 396-405
Author(s):  
NATALIA POLITI ◽  
SEBASTIÁN MARTINUZZI ◽  
PATRICIA SARDINA ARAGÓN ◽  
VERÓNICA MIRANDA ◽  
SEBASTIÁN ALBANESI ◽  
...  

SummaryThe Rufous-throated Dipper Cinclus schulzi is endemic to the Southern Yungas of north-western Argentina and southern Bolivia. The species is categorised as ‘Vulnerable’ on the IUCN Red List on the basis of small population size and restricted range. The purpose of our study was to determine the distribution of potentially suitable habitat for the Rufous-throated Dipper, estimate its population size, and assess potential distribution within strict protected areas, in north-western Argentina. We surveyed 44 rivers in the Southern Yungas of Argentina from 2010 to 2013 to determine dipper density (i.e. the number of individuals detected per km surveyed). The dipper’s potential distribution was assessed using a maximum entropy modeling approach based on 31 occurrence points and eight bioclimatic and two topographic variables as predictors. The species is dependent on mountain forest rivers, so the potential distribution was restricted to rivers. We estimated dipper population size by multiplying density by the potential distribution along rivers. Finally, we calculated the extent of suitable habitat contained within the boundaries of Argentina´s National Parks. Dipper density was 0.94 ± 1.55 individuals/km. We estimate that within north-west Argentina there are ~2,815 km of river that are potential habitat, with an area of occupancy of 141 km2 and a population size of 2,657 ± 4,355 dippers. However, of this river extent, less than 5% is within National Parks. Our results highlight the need to create new and to enlarge existing National Parks that protect the potentially suitable habitat of the species. Although more information is needed for Bolivia, the country-level area of occupancy and population size of the dipper found in Argentina provides strong evidence that the IUCN Red List classification of this species as ‘Vulnerable’ is warranted.


2021 ◽  
Vol 9 ◽  
Author(s):  
Sara Bárrios ◽  
Martin Hamilton

Hybridization is an evolutionary event present in the natural world. Several studies suggest that natural hybridization is an important process in plant evolution, creating new genetic combinations which can play a vital role in speciation (Soltis and Soltis 2009, Soltis 2013, Neri et al. 2017, Taylor and Larson 2019). Therefore, it is important to understand and protect naturally occurring hybrids, conserving their ecological novelties and new traits, such as the ability to explore new niches, different from those of the parental species (Soltis 2013, Supple and Shapiro 2018). The British Virgin Islands (BVI) is a UK Overseas Territory situated in the Caribbean biodiversity hotspot (Myers et al. 2000). To date, three natural hybrids are known to occur within this territory: Tillandsia × lineatispica Mez, Anthurium × selloanum K.Koch and Coccoloba krugii × C. uvifera R.A.Howard (Howard 1957, Acevedo-Rodriguez and Strong 2005, Acevedo-Rodriguez and Strong 2012). Tillandsia × lineatispica is endemic to the Puerto Rican Bank, occurring in Puerto Rico, the US Virgin Islands (USVI) and the British Virgin Islands with an extent of occurrence estimated to be 3,390 km2 and a limited number of locations. The suitable habitat for this hybrid is declining mainly due to the negative impacts of feral ungulates, development for tourism and residential infrastructure and the impact of human-induced wildfires. In addition, it is suspected that the global population does not exceed 10,000 individuals with the largest subpopulation on Beef Island in the BVI thought to have no more than 1,000 mature individuals. This hybrid is therefore evaluated as Vulnerable, based on IUCN Red List Criteria, B1a(iii)+2b(iii) + C2a(i). Anthurium × selloanum is an endemic hybrid to BVI and USVI with a very restricted extent of occurrence which was estimated to range between 103 km2 and 207 km2 and an area of occupancy which was estimated to range between 56 km2 and 188 km2 and a limited number of locations. The suitable habitat of this species is declining mainly due to the negative impacts of feral ungulates, development for tourism and residential infrastructure and the negative impact of recreation activities in protected areas. This species is therefore evaluated as Endangered, based on IUCN Red List Criteria B1a+ b(iii) + B2a+b(iii). Coccoloba krugii × C. uvifera is native to the BVI, USVI, Puerto Rico, Dominican Republic, Haiti and Anguilla. It is estimated to have an extent of occurrence of 89,412 km2. This value exceeds the threshold for any threatened category. Despite an observed continuing decline of suitable habitat for this species, which is being degraded mainly through ongoing development pressures, this species occurs in more than 10 locations. It is therefore assessed as Least Concern (LC). In this paper, we discuss the conservation status of all the known, naturally occurring, native hybrids in the the British Virgin Islands and we provide distribution data, including new records, from across these hybrid species ranges. Although conservation assessments of hybrids are out of the scope of the published IUCN Red List of Threatened Species (IUCN Standards and Petitions Committee 2019), we use the IUCN Red List Criteria and Categories (version 3.1) to establish an equivalent conservation status of these hybrids and discuss conservation action due to the potential evolutionary importance of these naturally occurring hybrids. These assessments provide the necessary baseline information for prioritising species conservation and making informed management decisions, such as establishing the BVI's Tropical Important Plant Areas (TIPAS) network (Sanchez et al. 2019).


Oryx ◽  
2020 ◽  
pp. 1-6
Author(s):  
María M. Torres-Martínez ◽  
Héctor E. Ramírez-Chaves ◽  
Elkin A. Noguera-Urbano ◽  
Fernando C. Passos

Abstract The brown hairy dwarf porcupine Coendou vestitus is a poorly studied Andean species endemic to Colombia. Its current Red List category is contradictory: globally it is categorized as Data Deficient but in Colombia it is categorized as Vulnerable. This contradiction has limited the implementation of conservation programmes. We evaluate the level of rarity of the species and provide consolidated information for a new assessment of its Red List status. We reviewed literature, photographs, and voucher specimens in natural history collections. Using the confirmed records, we estimated the extent of occurrence (EOO) based on the minimum convex polygon and the area of occupancy (AOO) summing the area of grid squares occupied by the species. We found that C. vestitus is very rare, with a small range, low estimated population density, occurrence in only one habitat type and small body size. The species has an EOO of 3,323 km2 and an AOO of 24 km2, based on six confirmed localities, all on the western slopes of the Eastern Cordillera, in the central Andean region of Colombia. Based on the species' rarity, restricted distribution, and threats to its natural habitat, we recommend its categorization as Endangered on the IUCN Red List. This will help delineate research and conservation efforts for this porcupine, which has a highly restricted range and inhabits the threatened Andean forest.


2011 ◽  
Vol 2011 ◽  
pp. 1-14 ◽  
Author(s):  
Beth A. Polidoro ◽  
Cristiane T. Elfes ◽  
Jonnell C. Sanciangco ◽  
Helen Pippard ◽  
Kent E. Carpenter

Given the economic and cultural dependence on the marine environment in Oceania and a rapidly expanding human population, many marine species populations are in decline and may be vulnerable to extinction from a number of local and regional threats. IUCN Red List assessments, a widely used system for quantifying threats to species and assessing species extinction risk, have been completed for 1190 marine species in Oceania to date, including all known species of corals, mangroves, seagrasses, sea snakes, marine mammals, sea birds, sea turtles, sharks, and rays present in Oceania, plus all species in five important perciform fish groups. Many of the species in these groups are threatened by the modification or destruction of coastal habitats, overfishing from direct or indirect exploitation, pollution, and other ecological or environmental changes associated with climate change. Spatial analyses of threatened species highlight priority areas for both site- and species-specific conservation action. Although increased knowledge and use of newly available IUCN Red List assessments for marine species can greatly improve conservation priorities for marine species in Oceania, many important fish groups are still in urgent need of assessment.


Oryx ◽  
2006 ◽  
Vol 40 (2) ◽  
pp. 183-188 ◽  
Author(s):  
Walter J. Reisinger ◽  
Devi M. Stuart-Fox ◽  
Barend F.N. Erasmus

We quantified habitat associations and evaluated the conservation status of a recently identified, undescribed species of dwarf chameleon, Bradypodion sp. nov. Dhlinza, endemic to scarp forest remnants in KwaZulu-Natal Province, South Africa. At the microhabitat scale the Dhlinza dwarf chameleon was found more often in forest gaps and near paths than highly disturbed edges or forest interior. Chameleon presence was not explained by forest physiognomic variables such as vine cover, shrub and tree density, or canopy cover. Presence near gaps may be better explained by the combined effects of the thermal microenvironment and food availability. The species is moderately common where it occurs, with estimated densities of 4.7, 8.7 and 29.7 individuals per ha within forest interior, edges and gaps respectively. At the landscape scale, the chameleon occurs only in three remnant forests: the Dhlinza, Entumeni and Ongoye Forests. The species' extent of occurrence was estimated to be 88 km2 and its area of occupancy 49 km2. Based on the small area of remaining suitable habitat, this species meets the requirements for categorization as Endangered according to IUCN Red List criteria.


Author(s):  
Barnaby Walker ◽  
Tarciso Leão ◽  
Steven Bachman ◽  
Eve Lucas ◽  
Eimear Nic Lughadha

Extinction risk assessments are increasingly important to many stakeholders (Bennun et al. 2017) but there remain large gaps in our knowledge about the status of many species. The IUCN Red List of Threatened Species (IUCN 2019, hereafter Red List) is the most comprehensive assessment of extinction risk. However, it includes assessments of just 7% of all vascular plants, while 18% of all assessed animals lack sufficient data to assign a conservation status. The wide availability of species occurrence information through digitised natural history collections and aggregators such as the Global Biodiversity Information Facility (GBIF), coupled with machine learning methods, provides an opportunity to fill these gaps in our knowledge. Machine learning approaches have already been proposed to guide conservation assessment efforts (Nic Lughadha et al. 2018), assign a conservation status to species with insufficient data for a full assessment (Bland et al. 2014), and predict the number of threatened species across the world (Pelletier et al. 2018). The wide range in sources of species occurrence records can lead to data quality issues, such as missing, imprecise, or mistaken information. These data quality issues may be compounded in databases that aggregate information from multiple sources: many such records derive from field observations (78% for plant species in GBIF; Meyer et al. 2016) largely unsupported by voucher specimens that would allow confirmation or correction of their identification. Even where voucher specimens do exist, different taxonomic or geographic information can be held for a single collection event represented by duplicate specimens deposited in different natural history collections. Tools are available to help clean species occurrence data, but these cannot deal with problems like specimen misidentification, which previous work (Nic Lughadha et al. 2019) has shown to have a large impact on preliminary assessments of conservation status. Machine learning models based on species occurrence records have been reported to predict with high accuracy the conservation status of species. However, given the black-box nature of some of the better machine learning models, it is unclear how well these accuracies apply beyond the data on which the models were trained. Practices for training machine learning models differ between studies, but more interrogation of these models is required if we are to know how much to trust their predictions. To address these problems, we compare predictions made by a machine learning model when trained on specimen occurrence records that have benefitted from minimal or more thorough cleaning, with those based on records from an expert-curated database. We then explore different techniques to interrogate machine learning models and quantify the uncertainty in their predictions.


Oryx ◽  
2017 ◽  
Vol 52 (2) ◽  
pp. 300-315 ◽  
Author(s):  
J. Antonio de la Torre ◽  
José F. González-Maya ◽  
Heliot Zarza ◽  
Gerardo Ceballos ◽  
Rodrigo A. Medellín

AbstractThe IUCN Red List is widely used to guide conservation policy and practice. However, in most cases the evaluation of a species using IUCN Red List criteria takes into account only the global status of the species. Although subpopulations may be assessed using the IUCN categories and criteria, this rarely occurs, either because it is difficult to identify subpopulations or because of the effort involved. Using the jaguar Panthera onca as a model we illustrate that wide-ranging species that are assigned a particular category of threat based on the IUCN Red List criteria may display considerable heterogeneity within individual taxa in terms of the level of risk they face. Using the information available on the conservation status of the species, we evaluated the jaguar's current geographical range and its subpopulations. We identified the most threatened subpopulations, using the extent of occurrence, area of occupancy, population size and the level of threat to each subpopulation. The main outcome of this analysis was that although a large subpopulation persists in Amazonia, virtually all others are threatened because of their small size, isolation, deficient protection and the high human population density. Based on this approach, future conservation efforts can be prioritized for the most threatened subpopulations. Based on our findings we recommend that for future Red List assessments assessors consider the value of undertaking assessments at the subpopulation level. For the jaguar, sub-global assessments should be included on the Red List as a matter of urgency.


Oryx ◽  
2011 ◽  
Vol 45 (3) ◽  
pp. 439-443 ◽  
Author(s):  
Rodrigo C. Printes ◽  
Anthony B. Rylands ◽  
Júlio César Bicca-Marques

AbstractThe blond titi monkey Callicebus barbarabrownae lives in forest fragments in the caatinga (tropical thorn scrub and forest) of north-east Brazil. In 2004–2005 we carried out five surveys to determine its current distribution and conservation status; surveying forest fragments, interviewing local people, and recording vegetation types and patterns of land use. The blond titi monkey occurs mainly in Dense Arboreal Caatinga and Highland Coastal Rainforest in the state of Bahia, at elevations of 241–908 m. Its range extends over 291,438 km2, with an area of occupancy of 2,636 km2. Estimated minimum population was 260 individuals. It was not recorded in any protected area. Cattle ranching favours the persistence of forest fragments for this species, whereas agriculture, subsistence or commercial, does not. Our findings supported the IUCN Red List assessment of Critically Endangered for this species.


2011 ◽  
Vol 366 (1578) ◽  
pp. 2598-2610 ◽  
Author(s):  
Michael Hoffmann ◽  
Jerrold L. Belant ◽  
Janice S. Chanson ◽  
Neil A. Cox ◽  
John Lamoreux ◽  
...  

A recent complete assessment of the conservation status of 5487 mammal species demonstrated that at least one-fifth are at risk of extinction in the wild. We retrospectively identified genuine changes in extinction risk for mammals between 1996 and 2008 to calculate changes in the International Union for Conservation of Nature (IUCN) Red List Index (RLI). Species-level trends in the conservation status of mammalian diversity reveal that extinction risk in large-bodied species is increasing, and that the rate of deterioration has been most accelerated in the Indomalayan and Australasian realms. Expanding agriculture and hunting have been the main drivers of increased extinction risk in mammals. Site-based protection and management, legislation, and captive-breeding and reintroduction programmes have led to improvements in 24 species. We contextualize these changes, and explain why both deteriorations and improvements may be under-reported. Although this study highlights where conservation actions are leading to improvements, it fails to account for instances where conservation has prevented further deteriorations in the status of the world's mammals. The continued utility of the RLI is dependent on sustained investment to ensure repeated assessments of mammals over time and to facilitate future calculations of the RLI and measurement against global targets.


2018 ◽  
Vol 10 (8) ◽  
pp. 12056
Author(s):  
Kersley Bruno Pynee ◽  
David Harold Lorence ◽  
Poojanraj Khurun

Aerva congesta Balf.f. ex Baker (Amaranthaceae), an endemic of Mascarene Islands (Mauritius and Rodrigues) is assessed for its conservation status. Considering its local extinction in Rodrigues and very small population in Mauritius, in Round Island and at Gris Gris, south of Mauritius its area of occupancy (AOO) is estimated at 8km².  Due to its small AOO and threats by increasing native vegetation and alien species, A. congesta is evaluated as Critically Endangered following the latest IUCN Red List criteria.  The species needs an urgent well-defined restoration program and ecological studies to prevent its extinction.  


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