Reviewing taxonomic bias in a megadiverse country: primary biodiversity data, cultural salience, and scientific interest of South African animals

Taxonomic bias, resulting in some taxa receiving more attention than others, has been shown to persist throughout history. Such bias in primary biodiversity data needs to be addressed because the data are vital to environmental management. This study reviews taxonomic bias in South African primary biodiversity data obtained from the Global Biodiversity Information Facility (GBIF). The focus was specifically on animal classes, and regression analysis was used to assess the influence of scientific interest and cultural salience on taxonomic bias. A higher resolution analysis of the two explanatory variables’ influence on taxonomic bias is conducted using a generalised linear model on a subset of herpetofaunal families from the focal classes. Furthermore, the potential effects of cultural salience and scientific interest on a taxon’s extinction risk are investigated. The findings show that taxonomic bias in South Africa’s primary biodiversity data has similarities with global scale taxonomic bias. Among animal classes, there is strong bias towards birds while classes such as Polychaeta and Maxillopoda are under-represented. Cultural salience has a stronger influence on taxonomic bias than scientific interest. It is, however, unclear how these explanatory variables may influence the extinction risk of taxa. We recommend that taxonomic bias can be reduced if primary biodiversity data collection has a range of targets that guide (but do not limit) accumulation of species occurrence records per habitat. Within this range, a lower target of species occurrence records accommodates species that are difficult to detect. The upper target means occurrence records for any species are less urgent but nonetheless useful and thus data collection efforts can focus on species with fewer occurrence records.

Morphological and molecular confirmation of the common pipistrelle bat, Pipistrellus pipistrellus Schreber, 1774 (Vespertilionidae: Chiroptera), in Xinjiang, China

Species identification is pivotal in taxonomy, systematics, evolutionary biology and conservation biology. We collected bats that died of natural causes in Shihezi city, Xinjiang, China, and carried out morphological and genetic identification. Morphologically, all individuals were adults/subadults or juveniles of Pipistrellus pipistrellus. We found one haplotype for the mitochondrial gene ND1 and five for the mitochondrial gene cytochrome b (Cytb) among six specimens. Phylogenetically, all the Cytb sequences grouped with P. pipistrellus. We confirm this species’ occurrence in Xinjiang, China.

Effects of land use and weather on the presence and abundance of mosquito-borne disease vectors in a urban and agricultural landscape in Eastern Ontario, Canada

Weather and land use can significantly impact mosquito abundance and presence, and by consequence, mosquito-borne disease (MBD) dynamics. Knowledge of vector ecology and mosquito species response to these drivers will help us better predict risk from MBD. In this study, we evaluated and compared the independent and combined effects of weather and land use on mosquito species occurrence and abundance in Eastern Ontario, Canada. Data on occurrence and abundance (245,591 individuals) of 30 mosquito species were obtained from mosquito capture at 85 field sites in 2017 and 2018. Environmental variables were extracted from weather and land use datasets in a 1-km buffer around trapping sites. The relative importance of weather and land use on mosquito abundance (for common species) or occurrence (for all species) was evaluated using multivariate hierarchical statistical models. Models incorporating both weather and land use performed better than models that include weather only for approximately half of species (59% for occurrence model and 50% for abundance model). Mosquito occurrence was mainly associated with temperature whereas abundance was associated with precipitation and temperature combined. Land use was more often associated with abundance than occurrence. For most species, occurrence and abundance were positively associated with forest cover but for some there was a negative association. Occurrence and abundance of some species (47% for occurrence model and 88% for abundance model) were positively associated with wetlands, but negatively associated with urban ( Culiseta melanura and Anopheles walkeri ) and agriculture ( An. quadrimaculatus, Cs. minnesotae and An. walkeri ) environments. This study provides predictive relationships between weather, land use and mosquito occurrence and abundance for a wide range of species including those that are currently uncommon, yet known as arboviruses vectors. Elucidation of these relationships has the potential to contribute to better prediction of MBD risk, and thus more efficiently targeted prevention and control measures.

NEW RECORDS AND RARE TAXA FOR THE FRESHWATER EPILITHIC DIATOMS OF COTE DIVOIRE

The aim of the present study was to contribute to knowledge of the freshwater epilithic diatoms flora of Cote dIvoire. Diatoms were sampled in February and July 2012 on glass slides previously immersed during a period of 30 days at ten stations.The species composition of new and rare taxa was compiled, accompanied by illustrations. Forty two taxa distributed among 16 genera, 8 families and 5 orders were recorded in the temporal survey.Based on species occurrence frequency, 32 rare, 2 occasional, and 8 common species were registered. According to geographic distribution, taxa recorded were mostly cosmopolitan (47.72%) and tropical (43.18%), while 9.09% were endemic.Taking into account their affinity towards pH, 3 classes of diatoms : acidophilic taxa (35.47%), indifferent taxa (59.52%) and alkaliphilic taxa (4.76%)were found in the Me River.

Geographical and temporal distribution of hawkmoth (Lepidoptera: Sphingidae) species in Africa

Hawkmoths consist of species where most adults are nocturnal, but there are some day-flying genera. Hawkmoth species have a wide variety of life-history traits, comprising species with adults (mostly nectarivorous though with some exceptions, honey-feeding), but there are also species that do not feed at all. The nectarivorous species are an important component of tropical ecosystems, with significant roles as major pollinators of both crops and wild flora with the pollination done by the adult stage. Pollinators are in decline world-wide and there is need for baseline data to provide information about their conservation strategies. Species occurrence data from Museum collections have been shown to be of great value as a tool for prioritising conservation actions in Africa. The National Museums of Kenya (NMK) have a large and active entomology collection that is in continuous growth. The NMK’s collection of hawkmoths had not been digitised prior to 2017. This moth family Sphingidae includes about 1,602 species and 205 genera worldwide (Kitching et al. 2018) with the majority of these species occurring in Africa. These moth species can also be used as indicators in biodiversity assessments as they can be easily sampled and identified. However, hawkmoths have rarely been surveyed over the long term for this purpose. Long-term datasets are of unquestionable significance for understanding and monitoring temporal changes in biodiversity. These hawkmoth data have addressed one of the most significant challenges to insect conservation, the lack of baseline information concerning species diversity and distribution and have provided key historic hawkmoth species diversity and distribution data that can be used to monitor their populations in the face of climate change and other environmental degradation issues that are facing the world today. The publication of the hawkmoth species occurrence data records in GBIF has enhanced data visibility to a wider audience promoting availability for use. The hawkmoth (Lepidoptera: Sphingidae) collection at the National Museums of Kenya was digitised from 2017 – 2020 and this paper presents details of species occurrence records as in the insect collection at the NMK, Nairobi, Kenya. The collection holds 5,095 voucher specimens consisting of 88 genera and 208 species. The collection covers the period between 1904 and 2020. The geographical distribution of the hawkmoths housed at the NMK covers East Africa at 81.41%, West Africa at 7.20%, Southern Africa at 6.89%, Central Africa at 4.02% and North Africa at 0.2%.

Climatic curves as predictors in MaxEnt niche modeling

Environmental niche modelling (ENM) uses different types of variables to predict species occurrence. In widespread use are variables derived from climatic curves, i.e., average annual changes in some climatic parameter. This study shows how to use the climatic curves themselves as ENM predictors. The key step is projection of the curves' constituent variables on a suitable spline basis, which preserves time-ordering of the variables and supports smoothness of predictions. Complexity of the model is controlled by sensible choice of the spline basis, followed by lasso regularization in model fitting.

Occurrence of mesocarnivores in montane sky islands: How spatial and temporal overlap informs rabies management in a regional hotspot

Interspecific interactions among mesocarnivores can influence community dynamics and resource partitioning. Insights into these interactions can enhance understanding of local ecological processes that have impacts on pathogen transmission, such as the rabies lyssavirus. Host species ecology can provide an important baseline for disease management strategies especially in biologically diverse ecosystems and heterogeneous landscapes. We used a mesocarnivore guild native to the southwestern United States, a regional rabies hotspot, that are prone to rabies outbreaks as our study system. Gray foxes (Urocyon cinereoargenteus), striped skunks (Mephitis mephitis), bobcats (Lynx rufus), and coyotes (Canis latrans) share large portions of their geographic ranges and can compete for resources, occupy similar niches, and influence population dynamics of each other. We deployed 80 cameras across two mountain ranges in Arizona, stratified by vegetation type. We used two-stage modeling to gain insight into species occurrence and co-occurrence patterns. There was strong evidence for the effects of elevation, season, and temperature impacting detection probability of all four species, with understory height and canopy cover also influencing gray foxes and skunks. For all four mesocarnivores, a second stage multi-species co-occurrence model better explained patterns of detection than the single-species occurrence model. These four species are influencing the space use of each other and are likely competing for resources seasonally. We did not observe spatial partitioning between these competitors, likely due to an abundance of cover and food resources in the biologically diverse system we studied. From our results we can draw inferences on community dynamics to inform rabies management in a regional hotspot. Understanding environmental factors in disease hotspots can provide useful information to develop more reliable early-warning systems for viral outbreaks. We recommend that disease management focus on delivering oral vaccine baits onto the landscape when natural food resources are less abundant, specifically during the two drier seasons in Arizona (pre-monsoon spring and autumn) to maximize intake by all mesocarnivores.