scholarly journals Metagenomic Analysis of the Bioremediation of Diesel-Contaminated Canadian High Arctic Soils

PLoS ONE ◽  
2012 ◽  
Vol 7 (1) ◽  
pp. e30058 ◽  
Author(s):  
Etienne Yergeau ◽  
Sylvie Sanschagrin ◽  
Danielle Beaumier ◽  
Charles W. Greer
2010 ◽  
Vol 76 (17) ◽  
pp. 5773-5784 ◽  
Author(s):  
Christine Martineau ◽  
Lyle G. Whyte ◽  
Charles W. Greer

ABSTRACT The melting of permafrost and its potential impact on CH4 emissions are major concerns in the context of global warming. Methanotrophic bacteria have the capacity to mitigate CH4 emissions from melting permafrost. Here, we used quantitative PCR (qPCR), stable isotope probing (SIP) of DNA, denaturing gradient gel electrophoresis (DGGE) fingerprinting, and sequencing of the 16S rRNA and pmoA genes to study the activity and diversity of methanotrophic bacteria in active-layer soils from Ellesmere Island in the Canadian high Arctic. Results showed that most of the soils had the capacity to oxidize CH4 at 4°C and at room temperature (RT), but the oxidation rates were greater at RT than at 4°C and were significantly enhanced by nutrient amendment. The DGGE banding patterns associated with active methanotrophic bacterial populations were also different depending on the temperature of incubation and the addition of nutrients. Sequencing of the 16S rRNA and pmoA genes indicated a low diversity of the active methanotrophic bacteria, with all methanotroph 16S rRNA and pmoA gene sequences being related to type I methanotrophs from Methylobacter and Methylosarcina. The dominance of type I methanotrophs over type II methanotrophs in the native soil samples was confirmed by qPCR of the 16S rRNA gene with primers specific for these two groups of bacteria. The 16S rRNA and pmoA gene sequences related to those of Methylobacter tundripaludum were found in all soils, regardless of the incubation conditions, and they might therefore play a role in CH4 degradation in situ. This work is providing new information supporting the potential importance of Methylobacter spp. in Arctic soils found in previous studies and contributes to the limited body of knowledge on methanotrophic activity and diversity in this extreme environment.


2014 ◽  
Vol 89 (2) ◽  
pp. 257-269 ◽  
Author(s):  
Christine Martineau ◽  
Yao Pan ◽  
Levente Bodrossy ◽  
Etienne Yergeau ◽  
Lyle G. Whyte ◽  
...  

1998 ◽  
Vol 76 (11) ◽  
pp. 1930-1938 ◽  
Author(s):  
Yolande Dalpé ◽  
Susan G Aiken

Root and soil samples from 13 collecting sites located in the Canadian High Arctic were harvested between July 18 and 29, 1991, and surveyed for root colonization and spore populations of arbuscular mycorrhizal fungi. Grasses of the genus Festuca (Festuca brachyphylla Schult. & Schult., Festuca baffinensis Polunin, and Festuca hyperborea Holmen ex Frederiksen) served as target plants. Of the 197 plant-root systems and soil rhizospheres examined, 28% were associated with arbuscular mycorrhizae. Roots of both F. brachyphylla andF. baffinensis were colonized, while none were detected in F. hyperborea root specimens. Five arbuscular mycorrhizal fungal species were extracted from indigenous soils. The most frequent and abundant species was Glomus mosseae (Nicol. & Gerd.) Gerdemann & Trappe, which was isolated from 8 of the 13 sites sampled. Other Glomales species in Arctic soils were Glomus macrocarpum Tul & Tul., Glomus fasciculatum (Thaxter sensu Gerd.) Gerd. & Trappe emend. Walker & Koske, and two other unidentified Glomus species. Trap cultures of the indigenous soil with leek (Allium porrum L.) plants confirmed the identity of the species previously identified from original soil and allowed the detection of an additional species, Glomus aggregatum Schenck. & Smith. The novelty of these observations and the relationship between plant mycorrhizal status, fungal species, and soil disturbance are discussed.Key words: mycorrhizae, Arctic, biodiversity, Glomus, Festuca.


2003 ◽  
Vol 29 (2) ◽  
pp. 297-318 ◽  
Author(s):  
Becky Sjare ◽  
Ian Stirling ◽  
Cheryl Spencer

2021 ◽  
Vol 250 ◽  
pp. 118254
Author(s):  
Andy Vicente-Luis ◽  
Samantha Tremblay ◽  
Joelle Dionne ◽  
Rachel Y.-W. Chang ◽  
Pierre F. Fogal ◽  
...  

1990 ◽  
Vol 68 (9) ◽  
pp. 1848-1856 ◽  
Author(s):  
C. Bledsoe ◽  
P. Klein ◽  
L. C. Bliss

Although mycorrhizal associations are commonly found on roots of most plant species, little is known about the presence or absence of mycorrhizae in arctic regions. In the Canadian High Arctic, roots of 55 herbaceous and woody plant species were examined for mycorrhizae during the summers of 1987 and 1988 on Devon Island, N.W.T. Ectomycorrhizal associations were found on roots of Salix arctica, Dryas integrifolia, and Potentilla hyparctica; ericoid mycorrhizae formed on Cassiope tetragona and Vaccinium uliginosum. Ectomycorrhizal roots were often covered with black hyphae resembling the fungus Cenococcum geophilum; sclerotia characteristic of this fungus were found in soil extracts. Plants expected to have endomycorrhizal associations were apparently nonmycorrhizal in the traditional sense, since no arbuscules, vesicles, or pelotons were found on any roots during two field seasons. Although extensive fungal hyphae were often present on and within roots, these hyphae could not be conclusively identified as endomycorrhizal. Some dark, septate hyphae were present; their function, although unknown, may be beneficial to the host. In a series of greenhouse bioassays using arctic soils, no endomycorrhizal associations developed on test plants. Spores of vesicular–arbuscular fungi were not found in soil extracts. Thus in this survey, only ectomycorrhizal associations were observed, suggesting that the cold, dry winter and cold, wet summer climates in this area of the High Arctic severely limit formation of endomycorrhizae. Key words: roots, fungi, ectomycorrhizae, endomycorrhizae, arctic.


2019 ◽  
Vol 46 (12) ◽  
pp. 6681-6689 ◽  
Author(s):  
Louise M. Farquharson ◽  
Vladimir E. Romanovsky ◽  
William L. Cable ◽  
Donald A. Walker ◽  
Steven V. Kokelj ◽  
...  

Sign in / Sign up

Export Citation Format

Share Document