RNA-Seq Reveals Differential Gene Expression in Staphylococcus aureus with Single-Nucleotide Resolution

Joseph Osmundson; Scott Dewell; Seth A. Darst

doi:10.1371/journal.pone.0076572

RNA-Seq Reveals Differential Gene Expression in Staphylococcus aureus with Single-Nucleotide Resolution

PLoS ONE ◽

10.1371/journal.pone.0076572 ◽

2013 ◽

Vol 8 (10) ◽

pp. e76572 ◽

Cited By ~ 11

Author(s):

Joseph Osmundson ◽

Scott Dewell ◽

Seth A. Darst

Keyword(s):

Gene Expression ◽

Staphylococcus Aureus ◽

Differential Gene Expression ◽

Rna Seq ◽

Single Nucleotide ◽

Differential Gene ◽

Nucleotide Resolution ◽

Single Nucleotide Resolution

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Faculty Opinions recommendation of Scotty: a web tool for designing RNA-Seq experiments to measure differential gene expression.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature ◽

10.3410/f.717971189.793469500 ◽

2013 ◽

Author(s):

Stephen Turner

Keyword(s):

Gene Expression ◽

Differential Gene Expression ◽

Rna Seq ◽

Web Tool ◽

Differential Gene

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Single-nucleotide resolution analysis of the transcriptome structure of Clostridium beijerinckii NCIMB 8052 using RNA-Seq

BMC Genomics ◽

10.1186/1471-2164-12-479 ◽

2011 ◽

Vol 12 (1) ◽

Cited By ~ 45

Author(s):

Yi Wang ◽

Xiangzhen Li ◽

Yuejian Mao ◽

Hans P Blaschek

Keyword(s):

Clostridium Beijerinckii ◽

Rna Seq ◽

Single Nucleotide ◽

Resolution Analysis ◽

Nucleotide Resolution ◽

Single Nucleotide Resolution

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Differential gene expression in planktonic and biofilm cells of multiple antibiotic-resistant SalmonellaTyphimurium and Staphylococcus aureus

FEMS Microbiology Letters ◽

10.1111/j.1574-6968.2011.02429.x ◽

2011 ◽

Vol 325 (2) ◽

pp. 180-188 ◽

Cited By ~ 31

Author(s):

Xinlong He ◽

Juhee Ahn

Keyword(s):

Gene Expression ◽

Staphylococcus Aureus ◽

Differential Gene Expression ◽

Antibiotic Resistant ◽

Differential Gene ◽

And Staphylococcus Aureus

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Differential Gene Expression by RNA-Seq Analysis of the Primo Vessel in the Rabbit Lymph

Journal of Acupuncture and Meridian Studies ◽

10.1016/j.jams.2018.10.008 ◽

2019 ◽

Vol 12 (1) ◽

pp. 11-19 ◽

Cited By ~ 1

Author(s):

Jun-Young Shin ◽

Sang-Heon Choi ◽

Da-Woon Choi ◽

Ye-Jin An ◽

Jae-Hyuk Seo ◽

...

Keyword(s):

Gene Expression ◽

Differential Gene Expression ◽

Rna Seq ◽

Differential Gene

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Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq

Genome Research ◽

10.1101/gr.106120.110 ◽

2010 ◽

Vol 20 (9) ◽

pp. 1238-1249 ◽

Cited By ~ 225

Author(s):

T. Lu ◽

G. Lu ◽

D. Fan ◽

C. Zhu ◽

W. Li ◽

...

Keyword(s):

Rna Seq ◽

Single Nucleotide ◽

Function Annotation ◽

Nucleotide Resolution ◽

Single Nucleotide Resolution

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A Unified Model for Joint Normalization and Differential Gene Expression Detection in RNA-Seq Data

IEEE/ACM Transactions on Computational Biology and Bioinformatics ◽

10.1109/tcbb.2018.2790918 ◽

2019 ◽

Vol 16 (2) ◽

pp. 442-454 ◽

Cited By ~ 5

Author(s):

Kefei Liu ◽

Jieping Ye ◽

Yang Yang ◽

Li Shen ◽

Hui Jiang

Keyword(s):

Gene Expression ◽

Differential Gene Expression ◽

Unified Model ◽

Rna Seq ◽

Differential Gene

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Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data

Genome Biology ◽

10.1186/gb-2013-14-9-r95 ◽

2013 ◽

Vol 14 (9) ◽

pp. R95 ◽

Cited By ~ 408

Author(s):

Franck Rapaport ◽

Raya Khanin ◽

Yupu Liang ◽

Mono Pirun ◽

Azra Krek ◽

...

Keyword(s):

Gene Expression ◽

Differential Gene Expression ◽

Expression Analysis ◽

Gene Expression Analysis ◽

Comprehensive Evaluation ◽

Rna Seq ◽

Differential Gene Expression Analysis ◽

Analysis Methods ◽

Differential Gene

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Identification and Comparative Analysis of Differential Gene Expression in Soybean Leaf Tissue under Drought and Flooding Stress Revealed by RNA-Seq

Frontiers in Plant Science ◽

10.3389/fpls.2016.01044 ◽

2016 ◽

Vol 7 ◽

Cited By ~ 44

Author(s):

Wei Chen ◽

Qiuming Yao ◽

Gunvant B. Patil ◽

Gaurav Agarwal ◽

Rupesh K. Deshmukh ◽

...

Keyword(s):

Gene Expression ◽

Comparative Analysis ◽

Differential Gene Expression ◽

Leaf Tissue ◽

Rna Seq ◽

Flooding Stress ◽

Soybean Leaf ◽

Differential Gene

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Challenges and strategies in transcriptome assembly and differential gene expression quantification. A comprehensivein silicoassessment of RNA-seq experiments

Molecular Ecology ◽

10.1111/mec.12014 ◽

2012 ◽

Vol 22 (3) ◽

pp. 620-634 ◽

Cited By ~ 167

Author(s):

Nagarjun Vijay ◽

Jelmer W. Poelstra ◽

Axel Künstner ◽

Jochen B. W. Wolf

Keyword(s):

Gene Expression ◽

Differential Gene Expression ◽

Transcriptome Assembly ◽

Rna Seq ◽

Gene Expression Quantification ◽

Differential Gene ◽

Expression Quantification ◽

Challenges And Strategies

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RNA-seq-based transcriptome profiling reveals differential gene expression in the lungs of Sprague–Dawley rats during early-phase acute hypobaric hypoxia

Molecular Genetics and Genomics ◽

10.1007/s00438-015-1064-0 ◽

2015 ◽

Vol 290 (6) ◽

pp. 2225-2240 ◽

Cited By ~ 4

Author(s):

Priyanka Sharma ◽

Anju Bansal ◽

Prakash Chand Sharma

Keyword(s):

Gene Expression ◽

Differential Gene Expression ◽

Early Phase ◽

Hypobaric Hypoxia ◽

Transcriptome Profiling ◽

Rna Seq ◽

Sprague Dawley ◽

Acute Hypobaric Hypoxia ◽

Sprague Dawley Rats ◽

Differential Gene

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