scholarly journals Transcriptome Profiling Identifies Differentially Expressed Genes in Huoyan Goose Ovaries between the Laying Period and Ceased Period

PLoS ONE ◽  
2014 ◽  
Vol 9 (11) ◽  
pp. e113211 ◽  
Author(s):  
Xinhong Luan ◽  
Dawei Liu ◽  
Zhongzan Cao ◽  
Lina Luo ◽  
Mei Liu ◽  
...  
PeerJ ◽  
2018 ◽  
Vol 6 ◽  
pp. e4976 ◽  
Author(s):  
Panpan Hu ◽  
Gang Li ◽  
Xia Zhao ◽  
Fengli Zhao ◽  
Liangjie Li ◽  
...  

Strawberry (Fragaria × ananassa) is an ideal plant for fruit development and ripening research due to the rapid substantial changes in fruit color, aroma, taste, and softening. To gain deeper insights into the genes that play a central regulatory role in strawberry fruit development and ripening characteristics, transcriptome profiling was performed for the large green fruit, white fruit, turning fruit, and red fruit stages of strawberry. A total of 6,608 differentially expressed genes (DEGs) with 2,643 up-regulated and 3,965 down-regulated genes were identified in the fruit development and ripening process. The DEGs related to fruit flavonoid biosynthesis, starch and sucrose biosynthesis, the citrate cycle, and cell-wall modification enzymes played important roles in the fruit development and ripening process. Particularly, some candidate genes related to the ubiquitin mediated proteolysis pathway and MADS-box were confirmed to be involved in fruit development and ripening according to their possible regulatory functions. A total of fiveubiquitin-conjugating enzymesand 10MADS-box transcription factorswere differentially expressed between the four fruit ripening stages. The expression levels of DEGs relating to color, aroma, taste, and softening of fruit were confirmed by quantitative real-time polymerase chain reaction. Our study provides important insights into the complicated regulatory mechanism underlying the fruit ripening characteristics inFragaria × ananassa.


2020 ◽  
Author(s):  
haiping hao ◽  
xiao pei zhu ◽  
Hui Li ◽  
Jian Gong ◽  
Amjad Farooq ◽  
...  

Abstract Background Lavender flowers essential oil had been for a variety of therapeutic and cosmetic purposes, and had been popular for centuries. The previous studies of lavender mainly focused on essential oil composition and extraction methods, ignoring the factors which affected the production of essential oils, such as the floret number. This study aims to get a deeper insight into florets number difference mechanism. Results Hormone profile showed positive correlation between ABA content and the number of florets while IAA was negatively correlated. RNA-Seq results showed that 2848 differentially expressed genes screened by comparing different florets samples in one plant. By analyzing dynamic changes of differentially expressed genes, many potentially interesting genes were identified that encoded putative regulators or key components of ABA metabolism and signaling transduction, such as NCED, PYL, PP2C, SnRK2. These genes were highlighted to reveal their importance in regulation of florets numbers. Conclusions 1. The different ABA concentrations lead to florets difference in the Lavandula angustifolia “JX-2” clusters; 2. ABA may affect the florets number by regulating IAA transport and accumulation. The results will be useful for a better understanding of the molecular mechanism on florets number difference that could be laid the foundation for molecular breeding of muti-flortes varieties.


2018 ◽  
Author(s):  
Panpan Hu ◽  
Gang Li ◽  
Xia Zhao ◽  
Fengli Zhao ◽  
Liangjie Li ◽  
...  

Strawberry (Fragaria × ananassa) is an ideal plant for fruit development and ripening research due to the rapid substantial changes in fruit color, aroma, taste and softening. To gain deeper insights into the genes that play a central regulatory role in strawberry fruit development and ripening characteristics, transcriptome profiling was performed for the large green fruit, white fruit, turning fruit, and red fruit stages of strawberry. A total of 6,608 differentially expressed genes (DEGs) with 2,643 up-regulated and 3,965 down-regulated genes were identified in the fruit development and ripening process. The DEGs related to fruit flavonoid biosynthesis, starch and sucrose biosynthesis, the citrate cycle, and cell-wall modification enzymes played important roles in the fruit development and ripening process. Particularly, some candidate genes related to the ubiquitin mediated proteolysis pathway and MADS-box were confirmed to be involved in fruit development and ripening according to their possible regulatory functions. Five ubiquitin-conjugating enzymes and ten MADS-box transcription factors were differentially expressed between the four fruit ripening stages. The expression levels of DEGs relating to color, aroma, taste, and softening of fruit were confirmed by quantitative real-time polymerase chain reaction. Our study provides important insights into the complicated regulatory mechanism underlying the fruit ripening characteristics in Fragaria × ananassa.


2018 ◽  
Vol 29 ◽  
pp. vii77
Author(s):  
Joseph C. Tsui ◽  
Carol P. Lau ◽  
Leon M. Shi ◽  
Stephen K. Tsui ◽  
Shekhar M. Kumta

PLoS ONE ◽  
2019 ◽  
Vol 14 (6) ◽  
pp. e0217461
Author(s):  
Reena Arora ◽  
Naveen Kumar S. ◽  
Sudarshan S. ◽  
Mohamed Nadeem Fairoze ◽  
Mandeep Kaur ◽  
...  

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