scholarly journals Identification and Validation of Novel Hedgehog-Responsive Enhancers Predicted by Computational Analysis of Ci/Gli Binding Site Density

PLoS ONE ◽  
2015 ◽  
Vol 10 (12) ◽  
pp. e0145225 ◽  
Author(s):  
Katherine Gurdziel ◽  
David S. Lorberbaum ◽  
Aaron M. Udager ◽  
Jane Y. Song ◽  
Neil Richards ◽  
...  
Life Sciences ◽  
1985 ◽  
Vol 36 (2) ◽  
pp. 183-190 ◽  
Author(s):  
Elizabeth I. Tietz ◽  
Fernando Gomez ◽  
Robert F. Berman

1988 ◽  
Vol 251 (1) ◽  
pp. 141-145 ◽  
Author(s):  
A A Horner ◽  
M Kusche ◽  
U Lindahl ◽  
C B Peterson

Rat skin heparin proteoglycans vary markedly in the proportions of their constituent polysaccharide chains that have high binding affinity for antithrombin. As the proportion of such chains in a proteoglycan rises, their degree of affinity for antithrombin also increases [Horner (1987) Biochem. J. 244, 693-698]. The antithrombin-binding-site densities of such chains have now been determined, by measuring heparin-induced enhancement of the intrinsic fluorescence of antithrombin and by chemical analysis for the disaccharide sequence glucuronosyl-N-sulphoglucosaminyl (3,6-di-O-sulphate), which is unique to this site in heparin [Lindahl, Bäckström, Thunberg & Leder (1980) Proc. Natl. Acad. Sci. U.S.A. 77, 6551-6555]. Antithrombin-binding-site density ranged from one to five sites per chain.


2001 ◽  
Vol 21 (8) ◽  
pp. 2799-2807 ◽  
Author(s):  
Sharon R. Letchworth ◽  
Michael A. Nader ◽  
Hilary R. Smith ◽  
David P. Friedman ◽  
Linda J. Porrino

PLoS ONE ◽  
2016 ◽  
Vol 11 (9) ◽  
pp. e0161894 ◽  
Author(s):  
Cuong The Nguyen ◽  
Kiwamu Tanaka ◽  
Yangrong Cao ◽  
Sung-Hwan Cho ◽  
Dong Xu ◽  
...  

1994 ◽  
Vol 71 (3) ◽  
pp. 1052-1064 ◽  
Author(s):  
T. R. Cummins ◽  
Y. Xia ◽  
G. G. Haddad

1. The functional properties of sodium currents in acutely dissociated adult human, neonatal rat [postnatal day (P) 3 and P10], and mature rat (P21-23) neocortical pyramidal neurons were studied using whole-cell patch-clamp techniques. 2. The voltage dependence of activation and steady-state inactivation of neonatal rat sodium currents was shifted in the positive direction when compared with mature rat sodium currents. In contrast, no difference was detected between the voltage dependence of activation and steady-state inactivation of mature rat and adult human sodium currents. 3. The fast inactivation of rat (neonatal and mature) and human neocortical sodium currents were best fit with three components; a fast decay component, a slow decay component, and a persistent component. The magnitude of the persistent current in neocortical neurons averaged 1-3% of the peak current. Inactivation was faster for sodium currents in neonatal rat neocortical neurons than in mature neurons. No difference was detected in the kinetics of inactivation between mature rat and adult human sodium currents. 4. Saxitoxin (STX) inhibited neuronal sodium currents at nanomolar concentrations in neonatal and mature rat and adult human neocortical neurons. STX-insensitive channels were not detected. 5. STX affinity was also assayed using 3H-STX. A single high-affinity binding site was found in neonatal rat, mature rat, and adult human neocortical tissue. A developmental increase in STX binding site density in the rat neocortex was tightly correlated with the increase in the sodium current density (normalized to cell capacitance). Human neocortical tissue and mature rat neocortical tissue did not differ in STX binding site density or sodium current density. 6. From these electrophysiological and autoradiographic studies we conclude that 1) the increase in the normalized sodium current density and STX binding density with age postnatally reflects an increase in binding sites of sodium channels functionally expressed on neuronal membranes, 2) the functional differences in channel behavior with maturation can explain the higher threshold for excitation in neonatal neocortical neurons and the increase in accommodation or adaptation in firing in the mature neuron, and 3) mature rat neocortical neurons represent a valid model for the study of adult human pyramidal neocortical neurons in terms of Na+ channel expression and function.


2013 ◽  
Vol 9 (8) ◽  
pp. 7651-7661 ◽  
Author(s):  
M.D. Stevenson ◽  
H. Piristine ◽  
N.J. Hogrebe ◽  
T.M. Nocera ◽  
M.W. Boehm ◽  
...  

1989 ◽  
Vol 122 (2) ◽  
pp. 499-NP ◽  
Author(s):  
N. P. Lewis ◽  
D. R. Ferguson

ABSTRACT Basolateral membranes were prepared from rat renal cortex by density gradient centrifugation. Their purity was confirmed by electron microscopy and by marker enzyme enrichment. The basolateral membrane preparation was shown to be derived predominantly from the proximal renal tubule by measurement of hormone-stimulated adenylate cyclase; marked stimulation of adenylate cyclase was found with parathyroid hormone, but not with isoprenaline, antidiuretic hormone or calcitonin. A single class of specific high-affinity [3H]angiotensin II-binding site was identified in the basolateral membrane preparation which, after correction of results for tracer degradation, showed equilibrium dissociation constant of 0·23 nmol/l and binding site concentration of 485·8 fmol/mg protein. Binding sites for [3H]angiotensin II were measured in basolateral membranes prepared from rats fed diets with a low, normal or high sodium content. A trend of increased binding site density with reduced sodium intake was found which did not reach statistical significance. No effect on affinity was demonstrated. Treatment of rats on a low-sodium diet with captopril (500 mg/l drinking water) caused a significant reduction in binding site density; no effect on affinity was demonstrated. These findings suggest that the density of angiotensin II receptors at this site is altered by the activity of the renin-angiotensin system. Journal of Endocrinology (1989) 122, 499–507


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