scholarly journals Hierarchical ordering with partial pairwise hierarchical relationships on the macaque brain data sets

PLoS ONE ◽  
2017 ◽  
Vol 12 (5) ◽  
pp. e0177373
Author(s):  
Woosang Lim ◽  
Jungsoo Lee ◽  
Yongsub Lim ◽  
Doo-Hwan Bae ◽  
Haesun Park ◽  
...  
2018 ◽  
Author(s):  
Andreas Wartel ◽  
Patrik Lindenfors ◽  
Johan Lind

AbstractPrimate brains differ in size and architecture. Hypotheses to explain this variation are numerous and many tests have been carried out. However, after body size has been accounted for there is little left to explain. The proposed explanatory variables for the residual variation are many and covary, both with each other and with body size. Further, the data sets used in analyses have been small, especially in light of the many proposed predictors. Here we report the complete list of models that results from exhaustively combining six commonly used predictors of brain and neocortex size. This provides an overview of how the output from standard statistical analyses changes when the inclusion of different predictors is altered. By using both the most commonly tested brain data set and a new, larger data set, we show that the choice of included variables fundamentally changes the conclusions as to what drives primate brain evolution. Our analyses thus reveal why studies have had troubles replicating earlier results and instead have come to such different conclusions. Although our results are somewhat disheartening, they highlight the importance of scientific rigor when trying to answer difficult questions. It is our position that there is currently no empirical justification to highlight any particular hypotheses, of those adaptive hypotheses we have examined here, as the main determinant of primate brain evolution.


NeuroImage ◽  
1998 ◽  
Vol 7 (4) ◽  
pp. S727 ◽  
Author(s):  
Alex P. Zijdenbos ◽  
Jay N. Giedd ◽  
Jonathan D. Blumenthal ◽  
TomአPaus ◽  
Judith L. Rapoport ◽  
...  

NeuroImage ◽  
1998 ◽  
Vol 7 (4) ◽  
pp. S783 ◽  
Author(s):  
Alex P. Zijdenbos ◽  
Alberto Jimenez ◽  
Alan C. Evans

Bioimaging ◽  
1993 ◽  
Vol 1 (2) ◽  
pp. 119-128 ◽  
Author(s):  
Thorsten Schormann ◽  
Marcel von Matthey ◽  
Andreas Dabringhaus ◽  
Karl Zilles
Keyword(s):  

2008 ◽  
Author(s):  
Tauseef Rehman ◽  
Eldad Haber ◽  
Kilian Pohl ◽  
Steven Haker ◽  
Mike Halle ◽  
...  

The elastic registration of medical scans from different acquisition sequences is becoming an important topic for many research labs that would like to continue the post-processing of medical scans acquired via the new generation of high-field-strength scanners. In this note, we present a parameter-free registration algorithm that is well suited for this scenario as it requires no tuning to specific acquisition sequences. The algorithm encompasses a new numerical scheme for computing elastic registration maps based on the minimizing flow approach to optimal mass transport. The approach utilizes all of the gray-scale data in both images, and the optimal mapping from image A to image B is the inverse of the optimal mapping from B to A. Further, no landmarks need to be specified, and the minimizer of the distance functional involved is unique. We apply the algorithm to register the white matter folds of two different scans and use the results to parcellate the cortex of the target image. To the best of our knowledge, this is the first time that the optimal mass transport function has been applied to register large 3D multimodal data sets.


Bioimaging ◽  
1993 ◽  
Vol 1 (3) ◽  
pp. 185-185 ◽  
Author(s):  
Thorsten Schormann ◽  
Marcel von Matthey ◽  
Andreas Dabringhaus ◽  
Karl Zilles
Keyword(s):  

Author(s):  
John A. Hunt

Spectrum-imaging is a useful technique for comparing different processing methods on very large data sets which are identical for each method. This paper is concerned with comparing methods of electron energy-loss spectroscopy (EELS) quantitative analysis on the Al-Li system. The spectrum-image analyzed here was obtained from an Al-10at%Li foil aged to produce δ' precipitates that can span the foil thickness. Two 1024 channel EELS spectra offset in energy by 1 eV were recorded and stored at each pixel in the 80x80 spectrum-image (25 Mbytes). An energy range of 39-89eV (20 channels/eV) are represented. During processing the spectra are either subtracted to create an artifact corrected difference spectrum, or the energy offset is numerically removed and the spectra are added to create a normal spectrum. The spectrum-images are processed into 2D floating-point images using methods and software described in [1].


Author(s):  
Mark Ellisman ◽  
Maryann Martone ◽  
Gabriel Soto ◽  
Eleizer Masliah ◽  
David Hessler ◽  
...  

Structurally-oriented biologists examine cells, tissues, organelles and macromolecules in order to gain insight into cellular and molecular physiology by relating structure to function. The understanding of these structures can be greatly enhanced by the use of techniques for the visualization and quantitative analysis of three-dimensional structure. Three projects from current research activities will be presented in order to illustrate both the present capabilities of computer aided techniques as well as their limitations and future possibilities.The first project concerns the three-dimensional reconstruction of the neuritic plaques found in the brains of patients with Alzheimer's disease. We have developed a software package “Synu” for investigation of 3D data sets which has been used in conjunction with laser confocal light microscopy to study the structure of the neuritic plaque. Tissue sections of autopsy samples from patients with Alzheimer's disease were double-labeled for tau, a cytoskeletal marker for abnormal neurites, and synaptophysin, a marker of presynaptic terminals.


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