Gradient-Driven Diffusion Using Dual Control Volume Grand Canonical Molecular Dynamics (DCV-GCMD)

1995 ◽  
Vol 408 ◽  
Author(s):  
Frank Van Swol ◽  
Grant S. Heffelfinger

AbstractRecently we developed a new nonequilibrium molecular simulation method [1] that allows the direct study of interdiffusion in multicomponent mixtures. The method combines stochastic insertion and deletion moves characteristic of grand canonical (GC) simulations with molecular dynamics (MD) to control the chemical potential μi of a species i. Restricting the insertions and deletions to two separate control volumes (CV's) one can apply different μ's in distinct locations, and thus create chemical potential gradients. DCV-GCMD can be used to study transient phenomena such as the filling of micropores or used in steady-state mode to determine the diffusion coefficients in multicomponent fluid mixtures. We report on the effects of molecular interactions and demonstrate how in a sufficiently nonideal ternary mixture this can lead to up-hill or reverse diffusion. In addition we introduce a novel extension of DCV-GCMD that is specifically designed for the study of gradient-driven diffusion of molecules that are simply too large to be inserted and deleted.

1994 ◽  
Vol 366 ◽  
Author(s):  
Grant S. Heffelfinger ◽  
Phillip I. Pohl ◽  
Laura J. D. Frink

ABSTRACTIn this work a newly developed dual control volume grand canonical molecular dynamics technique simulates the diffusion of gas in a cylindrical pore. This allows spatial variation of chemical potential and hence an accurate simulation of steady state pressure driven diffusion. The molecular sieving nature of imicroporous imogolite models and the Knudsen effect are discussed and compared with experimental data.


2021 ◽  
Author(s):  
Simon Stephan ◽  
Dominik Schäfer ◽  
Kai Langenbach ◽  
Hans Hasse

A quasi-stationary molecular dynamics simulation method for studying mass transfer through vapour–liquid interfaces of mixtures driven by gradients of the chemical potential based on the dual control volume (DCV) method is described and tested. The rectangular simulation volume contains three bulk domains: a liquid domain in the middle with vapour on each side such that there are two vapour–liquid interfaces. The mass flux is generated by prescribing the chemical potential in control volumes in the vapour domains close to the outer boundary of the simulation volume. The simulation method was applied for studies of two binary Lennard-Jones mixtures: one in which a strong enrichment of the low-boiling component at the vapour–liquid interface is observed and another in which there is practically no enrichment. The two mixtures differ only in the dispersive interactions; their bulk diffusion coefficients are similar. Furthermore, the prescribed chemical potential difference was the same in all simulations. Nevertheless, important differences in the mass flux of the low-boiling component were observed for the two mixtures at all studied temperatures which might be related to the enrichment at the interfaces.


2020 ◽  
Author(s):  
M. Girard ◽  
T. Bereau

ABSTRACTThe plasma membrane is the interface between cells and exterior media. While its existence has been known for a long time, organization of its constituent lipids remain a challenge. Recently, we have proposed that lipid populations may be controlled by chemical potentials of different lipid species, resulting in semi-grand canonical thermodynamic ensembles. However, the currently available molecular dynamics software packages do not allow for molecule-based chemical potentials. Here, we propose a variation on existing algorithms that allow defining chemical potentials for molecules. Additionally, we allow coupling with collective variables and show that it can be used to dynamically create asymmetric membranes. We release an implementation of the algorithm for the HOOMD-Blue molecular dynamics engine.SIGNIFICANCEWe demonstrate an algorithm that allows for simulations of molecules in the semi-grand canonical ensemble. It also allows coupling the chemical potential values to collective variable and create asymmetric membranes.


Author(s):  
Masoud Darbandi ◽  
Rasool Khaledi-Alidusti ◽  
Moslem Sabouri ◽  
Hossein Reza Abbasi

The Poiseuille flow through slit-like nanochannels is investigated using the nonequilibrium molecular dynamics simulations. To drive a dense flow through the channel, we use two self-adjusting vertical plates strategy. These plates force the liquid to flow through the nanochannel under adjustable inlet and outlet boundary conditions. Comparing with the dual-control-volume grand-canonical molecular dynamics method, the current strategy provides many advantages. The current strategy does not need particle insertion and deletion, therefore, the system dynamics would not be affected at all. Moreover, the number of particles in the simulation system is fixed due to inserting the two self-adjusting vertical plates at the two ends of the nanochannel. The motion of these plates are controlled using a combination of an externally applied force and an internal force produced by the molecules in the system. Using this strategy, we study the transport of liquid argon and oxygen through a few slit-like nanochannels having different sizes. We benefit from the nonequilibrium molecular dynamics (NEMD) strategy in our simulations. To expand our study, we consider different back pressure implementations in the flow through the nanochannel. The current results are eventually compared with those derived by applying a uniform driving force method and their advantages are described.


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