Ancient Ascaris DNA Sequences of Cytochrome B, Cytochrome C Oxidase Subunit 1, NADH Dehydrogenase Subunit 1, and Internal Transcribed Spacer 1 Genes from Korean Joseon Mummy Feces

2017 ◽  
Vol 103 (6) ◽  
pp. 795 ◽  
Author(s):  
Jong Ha Hong ◽  
Chang Seok Oh ◽  
Min Seo ◽  
Jong-Yil Chai ◽  
Dong Hoon Shin
Insects ◽  
2020 ◽  
Vol 11 (4) ◽  
pp. 204
Author(s):  
Marlon Pazian ◽  
Tânia Nobre ◽  
Imen Blibech ◽  
Fernando T Rei

Prays oleae is the second most important pest in Mediterranean olive groves, causing substantial damage on olive production. We used mitochondrial [cytochrome c oxidase subunit I (COI), and NADH dehydrogenase subunit 5 (nad5)] and nuclear [ribosomal protein S5 (RpS5)] amplicons to assess the population variability in five main olive producing regions from Tunisia, to support or dismiss the existence of two non-monophyletic groups within the species, as found within Portugal. Our phylogenetic analysis with cytochrome c oxidase subunit I (COI) indeed displayed two distinct and well-supported clades of P. oleae, which were corroborated by the haplotype network reconstructed with both mitochondrial and nuclear amplicons. We were also able to dismiss the hypothesis that one of the clades would not develop on olive fruits. No correlation was observed between clades differentiation and geographic distribution. The existence of cryptic species can impact on the management of agroecosystems and on the perception of how these moths responds to environmental changes.


2007 ◽  
Vol 93 (4) ◽  
pp. 934-937 ◽  
Author(s):  
Jocelyne Collomb ◽  
Marie Machouart ◽  
Marie-France Biava ◽  
Mélanie Brizion ◽  
Karine Montagne ◽  
...  

2011 ◽  
Vol 11 (6) ◽  
pp. 1002-1011 ◽  
Author(s):  
GREGG P. ROBIDEAU ◽  
ARTHUR W. A. M. De COCK ◽  
MICHAEL D. COFFEY ◽  
HERMANN VOGLMAYR ◽  
HENK BROUWER ◽  
...  

2006 ◽  
Vol 80 (1) ◽  
pp. 7-13 ◽  
Author(s):  
K. Ando ◽  
M. Tsunemori ◽  
H. Akahane ◽  
S. Tesana ◽  
H. Hasegawa ◽  
...  

AbstractThe nucleotide sequences of partial 18S, complete internal transcribed spacer region 1 (ITS1), complete 5.8S, complete ITS2 and partial 28S of ribosomal DNA (rDNA) and cytochrome c oxidase subunit 1 of mitochondrial DNA (MCOI) from five species of gnathostomes (G. spinigerum, G. doloresi, G. nipponicum, G. hispidum and G. binucleatum with the former four species being distributed in Japan and Asia) that cause human gnathostomiasis were compared by direct polymerase chain reaction cycle-sequencing. The nucleotide sequences of each region of the18S (613 bp), 5.8S (158 bp) and 28S (598 bp) rDNA from the five species were almost identical. The ITS1 region was different in length for the five species. The nucleotide sequences of each region of ITS2 and partial MCO1 regions were different among the five species. Therefore, these two regions can be used as genetic markers for identification of worms.


F1000Research ◽  
2020 ◽  
Vol 8 ◽  
pp. 177
Author(s):  
Nur Asiah ◽  
Junianto Junianto ◽  
Ayi Yustiati ◽  
Sukendi Sukendi ◽  
Melta Rini Fahmi ◽  
...  

Background: Kelabau (Osteochilus spp.) is a freshwater fish commonly found in the rivers of Riau, Indonesia. Researchers believe that these are Osteochilus kelabau; however, accurate taxonomic determination of these fish in Riau waters has not been made. The purpose of this study was to facilitate the identification of the kelabau based on its morphology and genetics using biometric and cytochrome c oxidase subunit 1 (CO1) analyses, respectively. Methods: Fish samples were collected from the Siak, Kampar and Rokan rivers in Riau Province, Indonesia. The DNA of 90 fish was extracted from the caudal fins using a DNA extraction kit, after which it was amplified using primers Fish-F1 and Fish-R1. Sequencing was conducted by Applied Biosystems Macrogen Korea, and the DNA sequences were then edited and aligned using MEGA v. 7. All samples were BLAST-searched for identification using the National Center for Biotechnology Information and BOLD System. Phylogenetic trees were constructed, and the similarity index was calculated using accession numbers AP011385.1 and KC631202.1 in GenBank. Results: Analysis of the consensus barcode sequence for 86 species revealed a high percentage of barcode matches (96%–97% in GenBank and 96.6%–96.76% in the BOLD System). The nucleotide distance between groups of kelabau from the different rivers based on the Kimura 2-parameter model gave the following results: 0.05% between groups from the Siak and Kampar rivers, 0.09% between those from the Siak and Rokan rivers and 0.05% between those from the Kampar and Rokan rivers. The nucleotide distance between the groups in the Siak (0.09%), Kampar (0.00%) and Rokan (0.10%) Rivers indicated that the kelabau in those rivers were related to each other. Conclusions: Based on the results of the research data using CO1 and biometric analyses, the kelabau were confirmed to be O. melanopleurus.


Author(s):  
Virginijus Sruoga ◽  
Virmantas Stunžėnas ◽  
Brigita Paulavičiūtė

Coi Gene as a Molecular Marker of Elachista Species (Lepidoptera: Elachistidae: Elachistinae) from Different Lithuanian Populations We compared COI DNA sequences of three Elachista species occurring in Lithuania: Elachista maculicerusella, E. argentella, and E. pollinariella (Gelechioidea: Elachistidae: Elachistinae). Also, intraspecific differences in COI DNA between moth populations were tested. A 705 bp fragment of the 3'-end of cytochrome c oxidase subunit I gene (COI) was used. This mtDNA fragment was significantly different between all studied species. Intraspecific differences were detected only for E. maculicerusella from different Lithuanian populations. Our results support using the COI gene for identification of Elachista species and as a tool for exploring intraspecific differences between populations.


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