Radiation Damage to a DNA-Binding Protein. Combined Circular Dichroism and Molecular Dynamics Simulation Analysis

Dna Binding ◽

Radiation Damage ◽

Simulation Analysis ◽

Binding Protein ◽

Dna Binding Protein ◽

Dynamics Simulation ◽

Molecular Dynamics Simulation of a DNA Binding Protein free and in Complex with DNA

Computational Approaches in Supramolecular Chemistry ◽

10.1007/978-94-011-1058-7_29 ◽

1994 ◽

pp. 441-456 ◽

Cited By ~ 1

Author(s):

Mats Eriksson ◽

Torleif Härd ◽

Lennart Nilsson

Keyword(s):

Molecular Dynamics ◽

Dna Binding ◽

Binding Protein ◽

Dna Binding Protein ◽

Dynamics Simulation

Homology modeling and molecular dynamics simulation studies of a hypothetical HIV-1 DNA binding protein and potential E2-like target site in the HIV-1 LTR

Antiviral Research ◽

10.1016/0166-3542(95)94783-x ◽

1995 ◽

Vol 26 (3) ◽

pp. A271

Keyword(s):

Molecular Dynamics ◽

Dna Binding ◽

Homology Modeling ◽

Binding Protein ◽

Dna Binding Protein ◽

Target Site ◽

Dynamics Simulation ◽

Simulation Studies ◽

Hiv 1

Molecular dynamics studies of a DNA-binding protein: 2. An evaluation of implicit and explicit solvent models for the molecular dynamics simulation of theEscherichia coli trprepressor

Protein Science ◽

10.1002/pro.5560010912 ◽

1992 ◽

Vol 1 (9) ◽

pp. 1185-1205 ◽

Cited By ~ 65

Author(s):

Jeanmarie Guenot ◽

Peter A. Kollman

Keyword(s):

Molecular Dynamics ◽

Dna Binding ◽

Binding Protein ◽

Dna Binding Protein ◽

Dynamics Simulation ◽

Solvent Models ◽

Explicit Solvent ◽

Implicit And Explicit

Escherichia coli AlkB and single-stranded DNA binding protein SSB interaction explored by Molecular Dynamics Simulation

Journal of Molecular Graphics and Modelling ◽

10.1016/j.jmgm.2018.05.007 ◽

2018 ◽

Vol 84 ◽

pp. 29-35 ◽

Cited By ~ 5

Author(s):

Monisha Mohan ◽

Vishal Pandya ◽

Roy Anindya

Keyword(s):

Escherichia Coli ◽

Molecular Dynamics ◽

Dna Binding ◽

Binding Protein ◽

Dna Binding Protein ◽

Dynamics Simulation ◽

Single Stranded Dna

Calculation of the circular dichroism spectrum of cyclo(l-tyr-l-tyr) based on a molecular dynamics simulation

Biophysical Chemistry ◽

10.1016/0301-4622(93)e0065-d ◽

1994 ◽

Vol 49 (2) ◽

pp. 141-152 ◽

Cited By ~ 23

Author(s):

Jörg Fleischhauer ◽

Joachim Grötzinger ◽

Bernd Kramer ◽

Peter Krüger ◽

Axel Wollmer ◽

...

Keyword(s):

Molecular Dynamics ◽

Circular Dichroism ◽

Circular Dichroism Spectrum ◽

Dynamics Simulation ◽

Interaction between adenovirus DNA-binding protein and single-stranded polynucleotides studied by circular dichroism and ultraviolet absorption

Biochemistry ◽

10.1021/bi00389a009 ◽

1987 ◽

Vol 26 (15) ◽

pp. 4646-4652 ◽

Cited By ~ 23

Author(s):

Herbert Van Amerongen ◽

Rienk Van Grondelle ◽

Peter C. Van der Vliet

Keyword(s):

Circular Dichroism ◽

Dna Binding ◽

Binding Protein ◽

Dna Binding Protein ◽

Ultraviolet Absorption ◽

Conformational study of bovine lactoferricin in membrane-micking conditions by molecular dynamics simulation and circular dichroism

BioMetals ◽

10.1007/s10534-010-9390-5 ◽

2010 ◽

Vol 24 (2) ◽

pp. 259-268 ◽

Cited By ~ 7

Author(s):

Isabella Daidone ◽

Alessandro Magliano ◽

Alfredo Di Nola ◽

Giuseppina Mignogna ◽

Matilda Manuela Clarkson ◽

...

Keyword(s):

Molecular Dynamics ◽

Circular Dichroism ◽

Dynamics Simulation ◽

Conformational Study ◽

Bovine Lactoferricin ◽

Circular Dichroism and Electron Microscopy of a Core Y61F Mutant of the F1 Gene 5 Single-Stranded DNA-Binding Protein and Theoretical Analysis of CD Spectra of Four Tyr → Phe Substitutions†

Biochemistry ◽

10.1021/bi972545k ◽

1998 ◽

Vol 37 (20) ◽

pp. 7463-7477 ◽

Cited By ~ 16

Author(s):

Teresa M. Thompson ◽

Barbara L. Mark ◽

Carla W. Gray ◽

Thomas C. Terwilliger ◽

Narasimha Sreerama ◽

...

Keyword(s):

Electron Microscopy ◽

Circular Dichroism ◽

Dna Binding ◽

Theoretical Analysis ◽

Binding Protein ◽

Dna Binding Protein ◽

Cd Spectra ◽

Single Stranded Dna ◽

Conformational changes of GDNF-derived peptide induced by heparin, heparan sulfate, and sulfated hyaluronic acid – Analysis by circular dichroism spectroscopy and molecular dynamics simulation

International Journal of Biological Macromolecules ◽

10.1016/j.ijbiomac.2021.05.194 ◽

2021 ◽

Author(s):

Lakkoji Satish ◽

Santanu Santra ◽

Mikhail V. Tsurkan ◽

Carsten Werner ◽

Madhurima Jana ◽

...

Keyword(s):

Molecular Dynamics ◽

Hyaluronic Acid ◽

Circular Dichroism ◽

Heparan Sulfate ◽

Conformational Changes ◽

Circular Dichroism Spectroscopy ◽

Dynamics Simulation ◽

Characterization of the Pf3 single-stranded DNA binding protein by circular dichroism spectroscopy

Biochemistry ◽

10.1021/bi00097a034 ◽

1993 ◽

Vol 32 (46) ◽

pp. 12538-12547 ◽

Cited By ~ 12

Author(s):

Michael D. Powell ◽

Donald M. Gray

Keyword(s):

Circular Dichroism ◽

Dna Binding ◽

Binding Protein ◽

Dna Binding Protein ◽

Circular Dichroism Spectroscopy ◽

Single Stranded Dna ◽