scholarly journals Ampelographic and molecular characterisation of grapevine varieties in the gene bank of the experimental vineyard ‘Radmilovac’ – Serbia

OENO One ◽  
2021 ◽  
Vol 55 (4) ◽  
pp. 129-144
Author(s):  
Kristina Milišić ◽  
Branislava Sivčev ◽  
Nataša Štajner ◽  
Jernej Jakše ◽  
Saša Matijašević ◽  
...  

Characterisations of thirty grapevine varieties (Vitis vinifera L.) from the experimental vineyard ‘Radmilovac’ were conducted using a large number of OIV descriptors and eight highly polymorphic microsatellite loci. The ampelographic description contained 45 features. Molecular characterisation of selected microsatellite loci was performed using capillary electrophoresis fragment analysis. Dendrograms based on ampelographic and genetic data resulted in three groups of varieties. Qualitative ampelographic characteristics tended to manifest significant differences. The most common deviation among varieties within the group was in the characteristic OIV 051 (colouration of the upper side of a young leaf). Genetic characterisation of SSR markers through analyses of a large number of varieties contributes to better organisation of grapevine collections and simpler identification of varieties, as well as data exchange. When identifying the varieties, the results of the DNA analysis should be combined with the ampelographic descriptors, in order to select grapevine varieties with desirable viticultural and oenological traits. Integration of the obtained genetic data with the ampelographic data is of utmost importance for accurate identification of the varieties and offers a significant means for the preservation and use of the varieties.

2022 ◽  
pp. 46-49
Author(s):  
Рамиль Ришадович Вафин ◽  
Ирина Юрьевна Михайлова ◽  
Владислав Константинович Семипятный ◽  
Ирина Игоревна Агейкина ◽  
Хамид Халимович Гильманов ◽  
...  

Использование полиморфных микросателлитных локусов ДНК является одним из подходов к аутентификации виноматериалов и вин. При этом SSR-маркеры хлоропластной ДНК имеют большую копийность мишени на клетку и менее подвержены деградации из-за содержания в органеллах с двойной мембраной. Целью настоящей работы являлось моделирование технологии идентификации виноматериалов и вин ПЦР-анализом микросателлитных локусов хлоропластной ДНК винограда. Подобраны условия экстракции нуклеиновых кислот, постановки ПЦР с соответствующими наборами праймеров и электрофоретической детекции, направленные на практическое воспроизведение генетического тестирования пробоподготовленного биоматериала из осаждаемого винного дебриса. Представлены наглядные результаты выравнивания частичных нуклеотидных последовательностей аллелей микросателлитных локусов хлоропластной ДНК Vitis vinifera L. Проанализирована разделяющая способность метода горизонтального электрофореза в геле «Spreadex EL 300» in silico моделированием генерируемых аллельспецифичных фрагментов, позволяющая идентифицировать известные хлоротипы винограда даже при постановке ПЦР с ограниченными наборами праймеров, нацеленных на локусы cpSSR3, cpSSR5, cpSSR10, NTCP12 и ccSSR9. The use of polymorphic microsatellite DNA loci is one of the approaches to the authentication of wine materials and wines. At the same time, SSR markers of chloroplast DNA have a large target copy number per cell and are less susceptible to degradation due to their content in organelles with a double membrane. The aim of this work was to simulate the technology of identification of wine materials and wines by PCR analysis of microsatellite loci of grapevine chloroplast DNA. The conditions for the extraction of nucleic acids, PCR with the corresponding sets of primers and electrophoretic detection were selected, aimed at the practical reproduction of genetic testing of the sample prepared biomaterial from the precipitated wine debris. Illustrative results of the alignment of partial nucleotide sequences of alleles of microsatellite loci of Vitis vinifera L. chloroplast DNA are presented. The separating ability of the method of horizontal electrophoresis in «Spreadex EL 300» gel by in silico modeling the generated allele-specific fragments, which makes it possible to identify the known chlorotypes of grapevine with a limited set of primers targeting loci (cpSSR3, cpSSR5, cpSSR10, NTCP12 and ccSSR9) has been analyzed.


2020 ◽  
Vol 27 (6) ◽  
pp. 307-315
Author(s):  
Özgür Güçlü ◽  
Bülent Bozdoğan

The Nile soft-shelled turtle (Trionyx triunguis) is distributed between Dalyan and Samandağ throughout the Mediterranean coast in Turkey. The Mediterranean subpopulation of the Nile soft-shelled turtle is listed as critically endangered in the IUCN Red List Categories. This investigation aimed to determinate levels of genetic variations and patterns of genetic structures among Mediterranean populations in Turkey by using T. triunguis-specific microsatellite primers. A total of 13 polymorphic microsatellite loci were studied among samples of 121 individuals collected from five populations in Turkey. Of 13 polymorphic microsatellite loci used, 3 new were identified in this study. The genetic differentiation among the 5 studied populations of T. triunguis was significant (p 0.001). The analysis of molecular variance (AMOVA) indicated that genetic variations occurred mainly within populations (89.7%) rather than among populations (10.3%). Structure analysis showed presence of two main groups among the Mediterranean T. triunguis populations. However genetic variations among populations were not correlated with geographic distance between the locations. Analysis of data showed that one of the populations (Dalyan) had undergone a bottleneck effect. Migration analysis indicates that T. triunguis migrates between five Mediterranean populations in Turkey. We concluded that based on our results the status of ‘critically endangered’ of T. triunguis should be maintained. Long term population genetic survey studies should be undertaken and changes in habitats of T. triunguis populations, as well as their population size and structure should be monitored for each population to be able to establish a clear strategy for protection of T. triunguis.


Diversity ◽  
2020 ◽  
Vol 12 (9) ◽  
pp. 343
Author(s):  
Luca Vecchioni ◽  
Federico Marrone ◽  
Marco Arculeo ◽  
Uwe Fritz ◽  
Melita Vamberger

The geographical pattern of genetic diversity was investigated in the endemic Sicilian pond turtle Emys trinacris across its entire distribution range, using 16 microsatellite loci. Overall, 245 specimens of E. trinacris were studied, showing high polymorphic microsatellite loci, with allele numbers ranging from 7 to 30. STRUCTURE and GENELAND analyses showed a noteworthy, geographically based structuring of the studied populations in five well-characterized clusters, supported by a moderate degree of genetic diversity (FST values between 0.075 and 0.160). Possible explanations for the genetic fragmentation observed are provided, where both natural and human-mediated habitat fragmentation of the Sicilian wetlands played a major role in this process. Finally, some conservation and management suggestions aimed at preventing the loss of genetic variability of the species are briefly reported, stressing the importance of considering the five detected clusters as independent Management Units.


2006 ◽  
Vol 6 (3) ◽  
pp. 680-682 ◽  
Author(s):  
JASON L. RASGON ◽  
MEERA VENKATESAN ◽  
CATHERINE J. WESTBROOK ◽  
MARY CLAIRE HAUER

2014 ◽  
Vol 6 (3) ◽  
pp. 711-713
Author(s):  
Ping Qiu ◽  
Xuefen Yang ◽  
Kai-Jian Wei ◽  
Zhihong Ma ◽  
Ruibin Yang

2013 ◽  
Vol 5 (3) ◽  
pp. 707-709
Author(s):  
Noriyuki Koizumi ◽  
Shinsuke Morioka ◽  
Atsushi Mori ◽  
Bounsong Vongvichith ◽  
Koichi Shibukawa ◽  
...  

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