scholarly journals Molecular phylogeny of the family Cosmocercidae (Nematoda: Ascaridida), with description of a new species of Aplectana using an integrative approach

2021 ◽  
Author(s):  
Hui-Xia Chen ◽  
Xiao-Hong Gu ◽  
Xue-Feng Ni ◽  
Liang Li
Keyword(s):  
New Species ◽  
Molecular Phylogeny ◽  
Ribosomal Dna ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Systematic Position ◽  
Integrative Approach ◽  
The Family ◽  
Molecular Phylogenetic ◽  
A New Species

Abstract Background Nematodes of the family Cosmocercidae (Ascaridida: Cosmocercoidea) are mainly parasitic in the digest tract of various amphibians and reptiles worldwide. However, our knowledge of the molecular phylogeny of the Cosmocercidae is still far from comprehensive. The phylogenetic relationships of the Cosmocercidae and the other two families Atractidae and Kathlaniidae in the superfamily Cosmocercoidea, are still under debate. Moreover, the systematic position of some genera in Cosmocercidae remains unclear. Methods Nematodes collected from Polypedates megacephalus (Hallowell) (Anura: Rhacophoridae) were identified using morphological methods (light and scanning electron microscopy) and molecular approaches [sequencing and analyzing the small ribosomal DNA (18S), internal transcribed spacer 1 (ITS-1), large ribosomal DNA (28S) and mitochondrial cytochrome c oxidase subunit 1 (cox1) target regions]. Phylogenetic analyses of cosmocercoid nematodes using 18S + 28S sequence data were performed to clarify the phylogenetic relationships of the Cosmocercidae, Atractidae and Kathlaniidae in the Cosmocercoidea, and the systematic position of the genus Aplectana in Cosmocercidae. Results Morphological and genetic evidence supported that the nematode specimens collected from P. megacephalus represents a new species of Aplectana (Cosmocercoidea: Cosmocercidae). Our phylogenetic results revealed that the Cosmocercidae is a monophyletic group, but not the basal group in Cosmocercoidea as the traditional classification. The Kathlaniidae is a paraphyletic group, and the subfamily Cruziinae (including only the genus Cruzia) formed a sister relationship to the Cosmocercidae. Phylogenetic analyses also showed that the genus Aplectana has closer relationship to the genus Cosmocerca in the Cosmocercidae. Conclusions Our molecular phylogenetic results supported that the subfamily Cruziinae should be moved out from the hitherto-defined family Kathlaniidae and elevated to a separate family, and the genus Cosmocerca has closer relationship to the genus Aplectana in the family Cosmocercidae, Our present study provided the basic molecular phylogenetic framework for the superfamily Cosmocercoidea based on 18S + 28S sequence data for the first time. Moreover, a new species of Aplectana, A. xishuangbannaensis n. sp., was described using an integrative approach.

scholarly journals Description of a new species of Aplectana (Nematoda: Ascaridomorpha: Cosmocercidae) using an integrative approach and preliminary phylogenetic study of Cosmocercidae and related taxa

2021 ◽  
Vol 14 (1) ◽  
Author(s):  
Hui-Xia Chen ◽  
Xiao-Hong Gu ◽  
Xue-Feng Ni ◽  
Liang Li
Keyword(s):  
New Species ◽  
Ribosomal Dna ◽  
Phylogenetic Relationships ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Systematic Position ◽  
Integrative Approach ◽  
Phylogenetic Study ◽  
The Family ◽  
A New Species

Abstract Background Nematodes of the family Cosmocercidae (Ascaridomorpha: Cosmocercoidea) are mainly parasitic in the digestive tract of various amphibians and reptiles worldwide. However, our knowledge of the molecular phylogeny of the Cosmocercidae is still far from comprehensive. The phylogenetic relationships between Cosmocercidae and the other two families, Atractidae and Kathlaniidae, in the superfamily Cosmocercoidea are still under debate. Moreover, the systematic position of some genera within Cosmocercidae remains unclear. Methods Nematodes collected from Polypedates megacephalus (Hallowell) (Anura: Rhacophoridae) were identified using morphological (light and scanning electron microscopy) and molecular methods [sequencing the small ribosomal DNA (18S), internal transcribed spacer 1 (ITS-1), large ribosomal DNA (28S) and mitochondrial cytochrome c oxidase subunit 1 (cox1) target regions]. Phylogenetic analyses of cosmocercoid nematodes using 18S + 28S sequence data were performed to clarify the phylogenetic relationships of the Cosmocercidae, Atractidae and Kathlaniidae in the Cosmocercoidea and the systematic position of the genus Aplectana in Cosmocercidae. Results Morphological and genetic evidence supported the hypothesis that the nematode specimens collected from P. megacephalus represent a new species of Aplectana (Cosmocercoidea: Cosmocercidae). Our phylogenetic results revealed that the Cosmocercidae is a monophyletic group, but not the basal group in Cosmocercoidea as in the traditional classification. The Kathlaniidae is a paraphyletic group because the subfamily Cruziinae within Kathlaniidae (including only the genus Cruzia) formed a seperate lineage. Phylogenetic analyses also showed that the genus Aplectana has a closer relationship to the genus Cosmocerca in Cosmocercidae. Conclusions Our phylogenetic results suggested that the subfamily Cruziinae should be moved from the hitherto-defined family Kathlaniidae and elevated as a separate family, and the genus Cosmocerca is closely related to the genus Aplectana in the family Cosmocercidae. The present study provided a basic molecular phylogenetic framework for the superfamily Cosmocercoidea based on 18S + 28S sequence data for the first time to our knowledge. Moreover, a new species, A. xishuangbannaensis n. sp., was described using integrative approach. Graphical abstract

Mimaporia, a new genus of Epicopeiidae (Lepidoptera), with description of a new species from Vietnam

Zootaxa ◽  
2017 ◽  
Vol 4254 (5) ◽  
pp. 537 ◽  
Author(s):  
CHIA-HSUAN WEI ◽  
SHEN-HORN YEN
Keyword(s):  
New Species ◽  
New Genus ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Taxonomic Status ◽  
Sister Group ◽  
Morphological Evidence ◽  
New Taxon ◽  
The Family ◽  
A New Species

The Epicopeiidae is a small geometroid family distributed in the East Palaearctic and Oriental regions. It exhibits high morphological diversity in body size and wing shape, while their wing patterns involve in various complex mimicry rings. In the present study, we attempted to describe a new genus, and a new species from Vietnam, with comments on two assumed congeneric novel species from China and India. To address its phylogenetic affinity, we reconstructed the phylogeny of the family by using sequence data of COI, EF-1α, and 28S gene regions obtained from seven genera of Epicopeiidae with Pseudobiston pinratanai as the outgroup. We also compared the morphology of the new taxon to other epicopeiid genera to affirm its taxonomic status. The results suggest that the undescribed taxon deserve a new genus, namely Mimaporia gen. n. The species from Vietnam, Mimaporia hmong sp. n., is described as new to science. Under different tree building strategies, the new genus is the sister group of either Chatamla Moore, 1881 or Parabraxas Leech, 1897. The morphological evidence, which was not included in phylogenetic analyses, however, suggests its potential affinity with Burmeia Minet, 2003. This study also provides the first, although preliminary, molecular phylogeny of the family on which the revised systematics and interpretation of character evolution can be based. 

Leptolejeunea nigra (Lejeuneaceae), a new species with brownish black ocelli based upon morphology and DNA sequences

Phytotaxa ◽  
2019 ◽  
Vol 427 (1) ◽  
pp. 31-42
Author(s):  
LEI SHU ◽  
RUI-LIANG ZHU
Keyword(s):  
New Species ◽  
Molecular Phylogeny ◽  
Dna Sequences ◽  
Phylogenetic Analyses ◽  
Morphological Characters ◽  
Time Span ◽  
Molecular Dating ◽  
Molecular Phylogenetic ◽  
Brownish Black ◽  
A New Species

Based on molecular phylogenetic analyses and morphological characters, a new species from Bangladesh, northern Vietnam, and southwestern China, Leptolejeunea nigra, is described. It is mostly similar to L. balansae but remarkable for having brownish black ocelli in its leaf lobes. In the molecular phylogeny, the samples of L. nigra are not nested within any clade and form an independent lineage. In particular, the molecular dating suggested that the divergence of L. nigra happened in time span of the formation of the Himalayas.

scholarly journals Morphology, genetic characterization and molecular phylogeny of pinworm Skrjabinema longicaudatum n. sp. (Oxyurida: Oxyuridae) from the endangered Tibetan antelope Pantholops hodgsonii (Abel) (Artiodactyla: Bovidae)

2020 ◽  
Vol 13 (1) ◽  
Author(s):  
Yi-Fan Cao ◽  
Hui-Xia Chen ◽  
Yang Li ◽  
Dang-Wei Zhou ◽  
Shi-Long Chen ◽  
...  
Keyword(s):  
New Species ◽  
Ribosomal Dna ◽  
Dna Sequences ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Large Subunit ◽  
Small Subunit ◽  
Sister Relationship ◽  
Tibetan Antelope ◽  
A New Species

Abstract Background The Tibetan antelope Pantholops hodgsonii (Abel) (Artiodactyla: Bovidae) is an endangered species of mammal endemic to the Qinghai-Tibetan Plateau. Parasites and parasitic diseases are considered to be important threats in the conservation of the Tibetan antelope. However, our present knowledge of the composition of the parasites of the Tibetan antelope remains limited. Methods Large numbers of nematode parasites were collected from a dead Tibetan antelope. The morphology of these nematode specimens was observed using light and scanning electron microscopy. The nuclear and mitochondrial DNA sequences, i.e. small subunit ribosomal DNA (18S), large subunit ribosomal DNA (28S), internal transcribed spacer (ITS) and cytochrome c oxidase subunit 1 (cox1), were amplified and sequenced for molecular identification. Moreover, phylogenetic analyses were performed using maximum likelihood (ML) inference based on 28S and 18S + 28S + cox1 sequence data, respectively, in order to clarify the systematic status of these nematodes. Results Integrated morphological and genetic evidence reveals these nematode specimens to be a new species of pinworm Skrjabinema longicaudatum (Oxyurida: Oxyuridae). There was no intraspecific nucleotide variation between different individuals of S. longicaudatum n. sp. in the partial 18S, 28S, ITS and cox1 sequences. However, a high level of nucleotide divergence was revealed between the new species and its congeners in 28S (8.36%) and ITS (20.3–23.7%) regions, respectively. Molecular phylogenetic results suggest that the genus Skrjabinema should belong to the subfamily Oxyurinae (Oxyuroidea: Oxyuridae), instead of the subfamily Syphaciidae or Skrjabinemiinae in the traditional classification, as it formed a sister relationship to the genus Oxyuris. Conclusions A new species of pinworm Skrjabinema longicaudatum n. sp. (Oxyurida: Oxyuridae) is described. Skrjabinema longicaudatum n. sp. represents the first species of Oxyurida (pinworm) and the fourth nematode species reported from the Tibetan antelope. Our results contribute to the knowledge of the species diversity of parasites from the Tibetan antelope, and clarify the systematic position of the genus Skrjabinema.

scholarly journals Two new entomopathogenic species of Ophiocordyceps in Thailand

MycoKeys ◽  
2019 ◽  
Vol 47 ◽  
pp. 53-74 ◽  
Author(s):  
Yuan-Pin Xiao ◽  
Sinang Hongsanan ◽  
Kevin D. Hyde ◽  
Siraprapa Brooks ◽  
Ning Xie ◽  
...  
Keyword(s):  
New Species ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Similar Species ◽  
Closely Related Species ◽  
The Family ◽  
Distinct Lineage ◽  
Morphological Differences ◽  
A New Species ◽  
Rpb1 Sequence

Ophiocordyceps is entomopathogenic and the largest studied genus in the family Ophiocordycipitaceae. Many species in this genus have been reported from Thailand. The first new species introduced in this paper, Ophiocordycepsglobiceps, differs from other species based on its smaller perithecia, shorter asci and secondary ascospores and additionally, in parasitising fly species. Phylogenetic analyses of combined LSU, SSU, ITS, TEF1α and RPB1 sequence data indicate that O.globiceps forms a distinct lineage within the genus Ophiocordyceps as a new species. The second new species, Ophiocordycepssporangifera, is distinguished from closely related species by infecting larvae of insects (Coleoptera, Elateridae) and by producing white to brown sporangia, longer secondary synnemata and shorter primary and secondary phialides. We introduce O.sporangifera based on its significant morphological differences from other similar species, even though phylogenetic distinction is not well-supported.

The genus Phillipsia from China and Thailand

Phytotaxa ◽  
2017 ◽  
Vol 316 (2) ◽  
pp. 138 ◽  
Author(s):  
ANUSHA H. EKANAYAKA ◽  
D. J. BHAT ◽  
KEVIN D. HYDE ◽  
E. B. GARETH JONES ◽  
QI ZHAO
Keyword(s):  
New Species ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Morphological Examination ◽  
Phylogenetic Studies ◽  
Molecular Phylogenetic ◽  
A New Species

The genus Phillipsia (Sarcoscyphaceae) is characterized by large, bright-coloured, sub-stipitate apothecia, sub-operculate asci and asymmetrical ascospores with longitudinal striations. Morphological and phylogenetic studies were carried out on new collections of Phillipsia from China and Thailand. Phillipsia subpurpurea are recorded from China and Phillipsia gelatinosa from Thailand is introduced as a new species to science. Our new collections are confirmed to be divergent from other species of Phillipsia based on morphological examination and molecular phylogenetic analyses of ITS and LSU sequence data. Descriptions and figures are provided for the taxa which are also compared with allied taxa.

scholarly journals Morphology, genetic characterization and molecular phylogeny of pinworm Skrjabinema longicaudatum sp. n. (Oxyurida: Oxyuridae) from the endangered Tibetan antelope Pantholops hodgsonii (Abel) (Artiodactyla: Bovidae)

2020 ◽  
Author(s):  
Yi-Fan Cao ◽  
Hui-Xia Chen ◽  
Yang Li ◽  
Dang-Wei Zhou ◽  
Shi-Long Chen ◽  
...  
Keyword(s):  
New Species ◽  
Ribosomal Dna ◽  
Dna Sequences ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Nematode Species ◽  
Sister Relationship ◽  
Tibetan Antelope ◽  
A New Species ◽  
Cox 1

Abstract Background The Tibetan antelope Pantholops hodgsonii (Abel) (Artiodactyla: Bovidae) is an endangered and endemic species of mammal to the Qinghai-Tibetan Plateau. Parasites and their caused parasitic diseases are considered to be important threats in the conservation of the Tibetan antelope. However, our present knowledge of the composition of the parasites from the Tibetan antelope remains limited. Methods Large numbers of nematode parasites were collected from a dead Tibetan antelope. The morphology of these nematode specimens were observed using light and scanning electron microscopy. The nuclear and mitochondrial DNA sequences [i.e. small ribosomal DNA (18S), large ribosomal DNA (28S), internal transcribed spacer (ITS) and cytochrome c oxidase subunit 1 ( cox 1)] were amplified and sequenced for molecular identification. Moreover, phylogenetic analyses were performed using maximum likelihood (ML) inference based on 28S and 18S + 28S + cox 1 sequence data, respectively, in order to clarify the systematic status of these nematodes. Results Integrated morphological and genetic evidence reveals these nematode specimens to be a new species of pinworm Skrjabinema longicaudatum sp. n. (Oxyurida: Oxyuridae). There is no intraspecific nucleotide variation found between different individuals of S. longicaudatum sp. n. in the partial 18S, 28S, ITS and cox 1 sequences. However, the high level of nucleotide divergence was revealed between the new species and its congeners in 28S (8.36%) and ITS (20.3–23.7%) regions, respectively. Molecular phylogenetic results supported that the genus Skrjabinema should belong to the subfamily Oxyurinae (Oxyuroidea: Oxyuridae), instead of the subfamily Syphaciidae or Skrjabinemiinae in the traditional classification, which formed a sister relationship to the genus Oxyuris . Conclusions A new species of pinworm Skrjabinema longicaudatum sp. n. (Oxyurida: Oxyuridae) was described. Skrjabinema longicaudatum sp. n. represents the first species of Oxyurida (pinworm) and the fourth nematode species reported from the Tibetan antelope. Our results contribute to our knowledge on the species diversity of parasites from the Tibetan antelope, and also clarified the systematic position of the genus Skrjabinema .

scholarly journals Morphological and molecular phylogenetic analyses reveal three species of Colletotrichum in Shandong province, China

MycoKeys ◽  
2021 ◽  
Vol 85 ◽  
pp. 57-71
Author(s):  
Taichang Mu ◽  
Zhaoxue Zhang ◽  
Rongyu Liu ◽  
Shubin Liu ◽  
Zhuang Li ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Host Range ◽  
Species Complex ◽  
Plant Pathogens ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Shandong Province ◽  
Molecular Phylogenetic ◽  
A New Species

Colletotrichum has numerous host range and distribution. Its species are important plant pathogens, endophytes and saprobes. Colletotrichum can cause regular or irregular depressions and necrotic lesions in the epidermal tissues of plants. During this research Colletotrichum specimens were collected from Mengyin County, Shandong Province, China. A multi-locus phylogenetic analysis of ITS, GAPDH, CHS-1, ACT, TUB2, CAL and GS sequence data combined with morphology, revealed a new species and two known species, viz. C. mengyinense sp. nov., C. gloeosporioides and C. pandanicola, belonging to the C. gloeosporioides species complex. The new species is described and illustrated in this paper and compared with taxa in the C. gloeosporioides species complex.

Molecular phylogeny and morphology of Cunninghamella guizhouensis sp. nov. (Cunninghamellaceae, Mucorales), from soil in Guizhou, China

Phytotaxa ◽  
2020 ◽  
Vol 455 (1) ◽  
pp. 31-39
Author(s):  
ZHI-YUAN ZHANG ◽  
YI-XUAN ZHAO ◽  
XIN SHEN ◽  
WAN-HAO CHEN ◽  
YAN-FENG HAN ◽  
...  
Keyword(s):  
New Species ◽  
Molecular Phylogeny ◽  
Sequence Data ◽  
Novel Species ◽  
Phylogenetic Analyses ◽  
Keratinolytic Fungi ◽  
A New Species ◽  
Shape And Size

During a survey of keratinolytic fungi in China, three Cunninghamella strains were isolated. Phylogenetic analyses of ITS and ITS+LSU+EF-1α sequence data showed that these strains constitute a new species related to C. blakesleeana, C. bigelovii, C. multiverticillata and C. phaeospora. The new species differs from C. multiverticillata and C. phaeospora in the shape and size of its teminal and lateral vesicles and can be distinguished from C. blakesleeana and C. bigelovii by the absent of zygosporangia, and the shape and size of it sporangioles. The results of phylogenetic and morphological analyses indicate that the three strains are a new species of Cunninghamella. Descriptions and illustrations of this novel species are provided in this paper.

The formerly enigmatic Unidentiidae in the limelight again: a new species of the genus Unidentia from Thailand (Gastropoda: Nudibranchia)

Zootaxa ◽  
2019 ◽  
Vol 4551 (5) ◽  
pp. 556 ◽  
Author(s):  
TATIANA KORSHUNOVA ◽  
RAHUL MEHROTRA ◽  
SPENCER ARNOLD ◽  
KENNET LUNDIN ◽  
BERNARD PICTON ◽  
...  
Keyword(s):  
New Species ◽  
Phylogenetic Analyses ◽  
Molecular Data ◽  
Morphological Data ◽  
Sea Slugs ◽  
The Family ◽  
Molecular Phylogenetic ◽  
Morphological Differences ◽  
First Time ◽  
A New Species

An integrative molecular and morphological study is presented for the family Unidentiidae. Molecular phylogenetic analyses were conducted with the inclusion of all previous and newly obtained molecular data for the family Unidentiidae Millen & Hermosillo 2012. A new species of the genus Unidentia Millen & Hermosillo 2012, U. aliciae sp. nov., is described from Thailand as part of an inventory of sea slugs at Koh Tao. All up-to-date available morphological data for the species of the genus Unidentia is for the first time summarized. Morphological differences among the different species of Unidentia are clarified showing that every species has its own distinguishable morphological traits. According to the new molecular and morphological data, the family Unidentiidae is re-confirmed as a well-supported taxon of the aeolidacean nudibranchs. The taxonomy and phylogeny of the Aeolidacea in the light of the family Unidentiidae is briefly discussed and necessity of a fine-scale and narrowly-defined taxa approach instead of a ‘‘superlumping’’ one is highlighted. 

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