scholarly journals Fusarium Oxysporum Disrupts Microbiome-Metabolome Networks in Arabidopsis Thaliana Roots

2021 ◽  
Author(s):  
Enoch Narh Kudjordjie ◽  
Kourosh Hooshmand ◽  
Rumakanta Sapkota ◽  
Inge S. Fomsgaard ◽  
Mogens Nicolaisen
Keyword(s):  
Arabidopsis Thaliana ◽  
Fusarium Oxysporum ◽  
Fungal Pathogen ◽  
Plant Disease ◽  
Differential Resistance ◽  
Amplicon Sequencing ◽  
Interactive Effects ◽  
Pathogen Invasion ◽  
Plant Disease Control ◽  
Microbiome Assembly

Abstract BackgroundAlthough it is well established that plant metabolomes mediate microbiome assembly, the question of how metabolome-microbiome interactions may prevent pathogen invasion remains to be answered. To address this question, we studied microbiome and metabolome profiles of two Arabidopsis thaliana accessions, Columbia-0 (Col-0) and Landsberg erecta (Ler-0) with differential resistance profiles to the fungal pathogen Fusarium oxysporum f.sp. mathioli (FOM). We used amplicon sequencing to characterize bacterial (16S) and fungal (ITS2) communities, and we used targeted metabolite analysis across 5 stages of FOM host progression. ResultsWe found that microbiome and metabolome profiles were markedly altered in FOM-inoculated and non-inoculated samples of resistant Col-0 and susceptible Ler-0. Co-occurrence network analysis revealed robust microbial networks in the resistant Col-0 compared to the susceptible Ler-0, during FOM infection. Specific metabolites and microbial OTUs (including indicator and hub OTUs) correlated in both non-inoculated and inoculated Col-0 and Ler-0. The glucosinolates 4-hydroxyglucobrassicin, neoglucobrassicin and indole-3 carbinol, but also phenolic compounds were active in structuring the A. thaliana-microbiome. ConclusionsOur results highlight the interactive effects of host resistance and its associated microbiota on Fusarium infection and progression. These findings shed significant insights into plant inter-omics dynamics during pathogen invasion and could possibly facilitate the exploitation of microbiomes for plant disease control.

scholarly journals Advances of Metabolomics in Fungal Pathogen–Plant Interactions

Metabolites ◽  
2019 ◽  
Vol 9 (8) ◽  
pp. 169 ◽  
Author(s):  
Fangfang Chen ◽  
Ruijing Ma ◽  
Xiao-Lin Chen
Keyword(s):  
Fungal Pathogen ◽  
Defense Mechanisms ◽  
Plant Disease ◽  
Pathogenic Fungi ◽  
Plant Pathogenic Fungi ◽  
Plant Interactions ◽  
Global Food Security ◽  
Plant Disease Control ◽  
Control Research ◽  
Mass Spectrometric Techniques

Plant disease caused by fungus is one of the major threats to global food security, and understanding fungus–plant interactions is important for plant disease control. Research devoted to revealing the mechanisms of fungal pathogen–plant interactions has been conducted using genomics, transcriptomics, proteomics, and metabolomics. Metabolomics research based on mass spectrometric techniques is an important part of systems biology. In the past decade, the emerging field of metabolomics in plant pathogenic fungi has received wide attention. It not only provides a qualitative and quantitative approach for determining the pathogenesis of pathogenic fungi but also helps to elucidate the defense mechanisms of their host plants. This review focuses on the methods and progress of metabolomics research in fungal pathogen–plant interactions. In addition, the prospects and challenges of metabolomics research in plant pathogenic fungi and their hosts are addressed.

scholarly journals Chromosome-scale genome assembly of Fusarium oxysporum strain Fo47, a fungal endophyte and biocontrol agent

2020 ◽  
Author(s):  
Bo Wang ◽  
Houlin Yu ◽  
Yanyan Jia ◽  
Quanbin Dong ◽  
Christian Steinberg ◽  
...  
Keyword(s):  
Fusarium Oxysporum ◽  
Genome Assembly ◽  
Plant Disease ◽  
Biocontrol Agent ◽  
Reference Genome ◽  
Fungal Endophyte ◽  
Vascular Wilt ◽  
Sequencing Data ◽  
Plant Disease Control ◽  
Long Read

AbstractHere, we report a chromosome-level genome assembly of Fusarium oxysporum strain Fo47 (12 pseudomolecules; contig N50: 4.52Mb), generated using a combination of PacBio long-read, Illumina pair-ended and Hi-C sequencing data. Although F. oxysporum causes vascular wilt to over 100 plant species, the strain Fo47 is classified as an endophyte and widely used as a biocontrol agent for plant disease control. The Fo47 genome carries a single accessory chromosome of 4.23 Mb, compared to the reference genome of F. oxysporum f.sp. lycopersici strain Fol4287. The high-quality assembly and annotation of the Fo47 genome will be a valuable resource for studying the mechanisms underlying the endophytic interactions between F. oxysporum and plants, as well as deciphering the genome evolution of the F. oxysporum species complex.

scholarly journals Visualizing and Quantifying Fusarium oxysporum in the Plant Host

2012 ◽  
Vol 25 (12) ◽  
pp. 1531-1541 ◽  
Author(s):  
Andrew Diener
Keyword(s):  
Arabidopsis Thaliana ◽  
Fusarium Oxysporum ◽  
Disease Severity ◽  
Fungal Pathogen ◽  
Vascular Cylinder ◽  
Wild Type ◽  
Fusarium Spp ◽  
Plant Host ◽  
Below Ground ◽  
Root Apices

Host-specific forms of Fusarium oxysporum infect the roots of numerous plant species. I present a novel application of familiar methodology to visualize and quantify F. oxysporum in roots. Infection in the roots of Arabidopsis thaliana, tomato, and cotton was detected with colorimetric reagents that are substrates for Fusarium spp.-derived arabinofuranosidase and N-acetyl-glucosaminidase activities and without the need for genetic modification of either plant host or fungal pathogen. Similar patterns of blue precipitation were produced by treatment with 5-bromo-4-chloro-3-indoxyl-α-l-arabinofuranoside and 5-bromo-4-chloro-3-indoxyl-2-acetamido-2-deoxy-β-d-glucopyranoside, and these patterns were consistent with prior histological descriptions of F. oxysporum in roots. Infection was quantified in roots of wild-type and mutant Arabidopsis using 4-nitrophenyl-α-l-arabinofuranoside. In keeping with an expectation that disease severity above ground is correlated with F. oxysporum infection below ground, elevated levels of arabinofuranosidase activity were measured in the roots of susceptible agb1 and rfo1 while a reduced level was detected in the resistant eir1. In contrast, disease severity and F. oxysporum infection were uncoupled in tir3. The distribution of staining patterns in roots suggests that AGB1 and RFO1 restrict colonization of the vascular cylinder by F. oxysporum whereas EIR1 promotes colonization of root apices.

scholarly journals Precision agriculture and geospatial techniques for sustainable disease control

2021 ◽  
Author(s):  
Daniel P. Roberts ◽  
Nicholas M. Short ◽  
James Sill ◽  
Dilip K. Lakshman ◽  
Xiaojia Hu ◽  
...  
Keyword(s):  
Big Data ◽  
Disease Control ◽  
Crop Production ◽  
Plant Disease ◽  
Production Systems ◽  
Cropping Systems ◽  
Data Driven ◽  
Agricultural Community ◽  
Plant Disease Control ◽  
Crop Germplasm

AbstractThe agricultural community is confronted with dual challenges; increasing production of nutritionally dense food and decreasing the impacts of these crop production systems on the land, water, and climate. Control of plant pathogens will figure prominently in meeting these challenges as plant diseases cause significant yield and economic losses to crops responsible for feeding a large portion of the world population. New approaches and technologies to enhance sustainability of crop production systems and, importantly, plant disease control need to be developed and adopted. By leveraging advanced geoinformatic techniques, advances in computing and sensing infrastructure (e.g., cloud-based, big data-driven applications) will aid in the monitoring and management of pesticides and biologicals, such as cover crops and beneficial microbes, to reduce the impact of plant disease control and cropping systems on the environment. This includes geospatial tools being developed to aid the farmer in managing cropping system and disease management strategies that are more sustainable but increasingly complex. Geoinformatics and cloud-based, big data-driven applications are also being enlisted to speed up crop germplasm improvement; crop germplasm that has enhanced tolerance to pathogens and abiotic stress and is in tune with different cropping systems and environmental conditions is needed. Finally, advanced geoinformatic techniques and advances in computing infrastructure allow a more collaborative framework amongst scientists, policymakers, and the agricultural community to speed the development, transfer, and adoption of these sustainable technologies.

scholarly journals Plant Disease Control Efficacy of Platycladus orientalis and Its Antifungal Compounds

Plants ◽  
2021 ◽  
Vol 10 (8) ◽  
pp. 1496
Author(s):  
Sohyun Bae ◽  
Jae Woo Han ◽  
Quang Le Dang ◽  
Hun Kim ◽  
Gyung Ja Choi
Keyword(s):  
Disease Control ◽  
Rice Blast ◽  
Plant Disease ◽  
Methanol Extract ◽  
Crop Protection ◽  
Ethyl Acetate Fraction ◽  
Antifungal Compounds ◽  
Control Efficacy ◽  
Platycladus Orientalis ◽  
Plant Disease Control

Plants contain a number of bioactive compounds that exhibit antimicrobial activity, which can be recognized as an important source of agrochemicals for plant disease control. In searching for natural alternatives to synthetic fungicides, we found that a methanol extract of the plant species Platycladus orientalis suppressed the disease development of rice blast caused by Magnaporthe oryzae. Through a series of chromatography procedures in combination with activity-guided fractionation, we isolated and identified a total of eleven compounds including four labdane-type diterpenes (1–4), six isopimarane-type diterpenes (5–10), and one sesquiterpene (11). Of the identified compounds, the MIC values of compounds 1, 2, 5 & 6 mixture, 9, and 11 ranged from 100 to 200 μg/mL against M. oryzae, whereas the other compounds were over 200 μg/mL. When rice plants were treated with the antifungal compounds, compounds 1, 2, and 9 effectively suppressed the development of rice blast at all concentrations tested by over 75% compared to the non-treatment control. In addition, a mixture of compounds 5 & 6 that constituted 66% of the P. orientalis ethyl acetate fraction also exhibited a moderate disease control efficacy. Together, our data suggest that the methanol extract of P. orientalis including terpenoid compounds has potential as a crop protection agent.

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